CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_002_00641
(
Aquilegia coerulea
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Aquca_002_00641
T257487_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.804
0.804
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_002_00641.1
MADS box
10
55
RLENTSGRQVTYSKRRAGILKKARELSILCDIDIALLMFSPTGKPT
Aquca_002_00641.2
MADS box
10
55
RLENTSGRQVTYSKRRAGILKKARELSILCDIDIALLMFSPTGKPT
Aquca_002_00641.3
MADS box
10
55
RLENTSGRQVTYSKRRAGILKKARELSILCDIDIALLMFSPTGKPT
Links
Other
MADS box
family TFs
Other
Aquilegia coerulea
TFs
111 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.957
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.936
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.891
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.891
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.854
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.854
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.848
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.848
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.848
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.848
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.848
F775_13266
Aegilops tauschii
F775_13266
I
0.848
30138.m004061
Ricinus communis
30138.m004061
I
0.833
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.833
TCM_014051
Theobroma cacao
TCM_014051
I
0.833
PK21701.1
Cannabis sativa
PK21701.1
I
0.833
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.833
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.833
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.830
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.830
Bra025685
Brassica rapa
Bra025685
I
0.830
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.826
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.826
Cla010361
Citrullus lanatus
Cla010361
I
0.826
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.826
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.812
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.812
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.812
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.812
Bra031049
Brassica rapa
Bra031049
I
0.812
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.812
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.812
Bra016544
Brassica rapa
Bra016544
I
0.812
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.812
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.804
Si028357m.g
Setaria italica
Si028357m.g
N
0.804
Pm006479
Prunus mume
Pm006479
I
0.804
MDP0000147667
Malus domestica
MDP0000147667
I
0.804
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.804
MDP0000146231
Malus domestica
MDP0000146231
I
0.804
OLONG_008007
Oryza longistaminata
OLONG_008007
N
0.804
OGLUM11G21110
Oryza glumaepatula
OGLUM11G21110
N
0.804
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.804
LPERR11G18320
Leersia perrieri
LPERR11G18320
N
0.804
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.804
MDP0000919323
Malus domestica
MDP0000919323
I
0.800
MDP0000146415
Malus domestica
MDP0000146415
I
0.800
MDP0000773068
Malus domestica
MDP0000773068
I
0.800
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.792
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.787
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.783
Ciclev10031963m.g
Citrus clementina
Ciclev10031963m.g
I
0.783
29813.m001508
Ricinus communis
29813.m001508
I
0.783
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.783
Lus10026613.g
Linum usitatissimum
Lus10026613.g
I
0.783
Lus10030450.g
Linum usitatissimum
Lus10030450.g
I
0.783
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.783
ORGLA11G0175900
Oryza glaberrima
ORGLA11G0175900
N
0.783
ORUFI11G23650
Oryza rufipogon
ORUFI11G23650
N
0.783
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.783
OBART11G21780
Oryza barthii
OBART11G21780
N
0.783
MTR_5g041650
Medicago truncatula
MTR_5g041650
I
0.783
OS11G0658700
Oryza sativa
OS11G0658700
N
0.783
POPTR_0008s08780
Populus trichocarpa
POPTR_0008s08780
I
0.783
orange1.1g018825m.g
Citrus sinensis
orange1.1g018825m.g
I
0.783
Ca_18082
Cicer arietinum
Ca_18082
I
0.783
Cla018884
Citrullus lanatus
Cla018884
I
0.783
TCM_011687
Theobroma cacao
TCM_011687
I
0.783
PK03147.1
Cannabis sativa
PK03147.1
I
0.783
SapurV1A.0458s0040
Salix purpurea
SapurV1A.0458s0040
I
0.783
AGL65
Arabidopsis thaliana
AT1G18750
D
0.771
mgf000945m
Mimulus guttatus
mgf000945m
I
0.771
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.771
mgf004425m
Mimulus guttatus
mgf004425m
I
0.771
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.771
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.766
GLYMA20G04500
Glycine max
GLYMA20G04500
N
0.761
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.761
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.761
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.761
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.761
AGL30
Arabidopsis thaliana
AT2G03060
I
0.761
OMERI11G18020
Oryza meridionalis
OMERI11G18020
N
0.761
BGIOSGA035654
Oryza indica
BGIOSGA035654
N
0.761
POPTR_0010s17450
Populus trichocarpa
POPTR_0010s17450
N
0.761
AGL33
Populus trichocarpa
POPTR_0018s08400
N
0.761
Pm024895
Prunus mume
Pm024895
I
0.761
Ca_16376
Cicer arietinum
Ca_16376
I
0.761
Cagra.0534s0009
Capsella grandiflora
Cagra.0534s0009
I
0.761
cassava17346.m1
Manihot esculenta
cassava17346.m1
I
0.761
Bostr.0556s0119
Boechera stricta
Bostr.0556s0119
I
0.761
cassava12018.valid.m1
Manihot esculenta
cassava12018.valid.m1
I
0.761
Carubv10017440m.g
Capsella rubella
Carubv10017440m.g
I
0.761
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.750
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.750
evm.TU.supercontig_1.45
Carica papaya
evm.TU.supercontig_1.45
N
0.739
Bra024792
Brassica rapa
Bra024792
I
0.739
OPUNC11G18320
Oryza punctata
OPUNC11G18320
N
0.739
Bo7g080890
Brassica oleracea
Bo7g080890
I
0.739
GLYMA07G35610
Glycine max
GLYMA07G35610
N
0.739
Bo9g072860
Brassica oleracea
Bo9g072860
N
0.739
Solyc03g115910.1
Solanum lycopersicum
Solyc03g115910.1
I
0.729
MDP0000193129
Malus domestica
MDP0000193129
I
0.729
PGSC0003DMG400019525
Solanum tuberosum
PGSC0003DMG400019525
N
0.723
Traes_7BL_7F4124E70
Triticum aestivum
Traes_7BL_7F4124E70
I
0.720
Lus10037166.g
Linum usitatissimum
Lus10037166.g
N
0.717
Ciclev10010259m.g
Citrus clementina
Ciclev10010259m.g
N
0.717
Bra017404
Brassica rapa
Bra017404
I
0.717
GSMUA_Achr11G14240_001
Musa acuminata
GSMUA_Achr11G14240_001
N
0.717
Gorai.013G086600
Gossypium raimondii
Gorai.013G086600
N
0.702