CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_054_00126
(
Aquilegia coerulea
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Aquca_054_00126
T257539_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_054_00126.1
MADS box
10
57
KIQRSAHRQVTFSKRRTGLFKKASELCILCGAEVAIVVFSPAGKVFSF
Links
Other
MADS box
family TFs
Other
Aquilegia coerulea
TFs
192 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
VIT_03s0088g00590
Vitis vinifera
VIT_03s0088g00590
N
0.812
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.812
evm.TU.supercontig_20.86
Carica papaya
evm.TU.supercontig_20.86
N
0.812
Aquca_040_00096
Aquilegia coerulea
Aquca_040_00096
N
0.792
mgf024307m
Mimulus guttatus
mgf024307m
N
0.792
Thhalv10000479m.g
Eutrema salsugineum
Thhalv10000479m.g
N
0.792
Thhalv10003338m.g
Eutrema salsugineum
Thhalv10003338m.g
N
0.792
Bostr.8705s0016
Boechera stricta
Bostr.8705s0016
N
0.792
Aquca_005_00477
Aquilegia coerulea
Aquca_005_00477
N
0.792
mgf018529m
Mimulus guttatus
mgf018529m
N
0.792
TCM_040735
Theobroma cacao
TCM_040735
N
0.792
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.789
PGSC0003DMG400044387
Solanum tuberosum
PGSC0003DMG400044387
N
0.771
Aquca_015_00242
Aquilegia coerulea
Aquca_015_00242
N
0.771
Aquca_015_00243
Aquilegia coerulea
Aquca_015_00243
N
0.771
scaffold_400572.1
Arabidopsis lyrata
scaffold_400572.1
N
0.771
GLYMA20G27341
Glycine max
GLYMA20G27341
N
0.771
Solyc01g106710.1
Solanum lycopersicum
Solyc01g106710.1
N
0.771
GLYMA20G27350
Glycine max
GLYMA20G27350
N
0.771
Ca_26354
Cicer arietinum
Ca_26354
N
0.771
MTR_3g080940
Medicago truncatula
MTR_3g080940
N
0.771
SapurV1A.0019s0700
Salix purpurea
SapurV1A.0019s0700
N
0.771
Ca_07607
Cicer arietinum
Ca_07607
N
0.771
TRAES3BF106100060CFD_g
Triticum aestivum
TRAES3BF106100060CFD_g
I
0.771
29613.m000367
Ricinus communis
29613.m000367
N
0.771
cassava41915.m1
Manihot esculenta
cassava41915.m1
N
0.771
AGL61
Arabidopsis thaliana
AT2G24840
N
0.771
Carubv10024914m.g
Capsella rubella
Carubv10024914m.g
N
0.771
Bra026764
Brassica rapa
Bra026764
N
0.771
F775_04223
Aegilops tauschii
F775_04223
I
0.771
AGL61
Arabidopsis lyrata
Al_scaffold_0004_541
N
0.771
AGL62
Arabidopsis thaliana
AT5G60440
I
0.771
LjSGA_079719.1
Lotus japonicus
LjSGA_079719.1
N
0.771
Cagra.1004s0007
Capsella grandiflora
Cagra.1004s0007
N
0.771
AC234185.1_FG006
Zea mays
AC234185.1_FG006
I
0.750
chr5.LjT39E05.40.nd
Lotus japonicus
chr5.LjT39E05.40.nd
N
0.750
VIT_03s0088g00610
Vitis vinifera
VIT_03s0088g00610
N
0.750
Ca_04665
Cicer arietinum
Ca_04665
N
0.750
PGSC0003DMG400045423
Solanum tuberosum
PGSC0003DMG400045423
N
0.750
MDP0000221590
Malus domestica
MDP0000221590
N
0.750
Solyc01g106730.1
Solanum lycopersicum
Solyc01g106730.1
N
0.750
Sb09g029120
Sorghum bicolor
Sb09g029120
I
0.750
Si019951m.g
Setaria italica
Si019951m.g
I
0.750
Gorai.006G127800
Gossypium raimondii
Gorai.006G127800
N
0.750
PRUPE_ppa026127mg
Prunus persica
PRUPE_ppa026127mg
N
0.750
LjSGA_042140.1
Lotus japonicus
LjSGA_042140.1
N
0.750
POPTR_0009s08740
Populus trichocarpa
POPTR_0009s08740
N
0.750
Pavir.J00788
Panicum virgatum
Pavir.J00788
I
0.750
TCM_029518
Theobroma cacao
TCM_029518
I
0.750
Bo4g157220
Brassica oleracea
Bo4g157220
N
0.750
Pm021071
Prunus mume
Pm021071
N
0.750
Bo8g099550
Brassica oleracea
Bo8g099550
N
0.750
MTR_2g030740
Medicago truncatula
MTR_2g030740
N
0.750
30099.m001671
Ricinus communis
30099.m001671
N
0.750
chr1.CM0088.830.nc
Lotus japonicus
chr1.CM0088.830.nc
N
0.750
Bra007829
Brassica rapa
Bra007829
N
0.750
Pavir.J11717
Panicum virgatum
Pavir.J11717
I
0.750
GRMZM5G891280
Zea mays
GRMZM5G891280
I
0.750
AGL62
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8002041
N
0.750
TCM_006323
Theobroma cacao
TCM_006323
N
0.729
Bostr.5325s0071
Boechera stricta
Bostr.5325s0071
N
0.729
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.729
gene01789-v1.0-hybrid
Fragaria vesca
gene01789-v1.0-hybrid
N
0.729
TCM_006324
Theobroma cacao
TCM_006324
N
0.729
Cagra.2519s0016
Capsella grandiflora
Cagra.2519s0016
N
0.729
Cucsa.298560
Cucumis sativus
Cucsa.298560
N
0.729
Ciclev10030142m.g
Citrus clementina
Ciclev10030142m.g
N
0.729
Ca_04662
Cicer arietinum
Ca_04662
N
0.729
Carubv10028580m.g
Capsella rubella
Carubv10028580m.g
N
0.729
Ca_05023
Cicer arietinum
Ca_05023
I
0.729
Bostr.26833s0197
Boechera stricta
Bostr.26833s0197
N
0.729
Pm021018
Prunus mume
Pm021018
N
0.729
Pm021070
Prunus mume
Pm021070
N
0.729
Eucgr.H04834
Eucalyptus grandis
Eucgr.H04834
N
0.729
Cla006571
Citrullus lanatus
Cla006571
N
0.729
Traes_6DL_609A01BD5
Triticum aestivum
Traes_6DL_609A01BD5
I
0.729
gene01788-v1.0-hybrid
Fragaria vesca
gene01788-v1.0-hybrid
I
0.729
cassava33542.m1
Manihot esculenta
cassava33542.m1
N
0.729
POPTR_0017s07460
Populus trichocarpa
POPTR_0017s07460
N
0.729
MTR_2g093190
Medicago truncatula
MTR_2g093190
N
0.729
MTR_1g108580
Medicago truncatula
MTR_1g108580
N
0.729
MTR_1g108510
Medicago truncatula
MTR_1g108510
N
0.729
MTR_1g105920
Medicago truncatula
MTR_1g105920
N
0.729
MTR_3g030770
Medicago truncatula
MTR_3g030770
N
0.729
MTR_3g052870
Medicago truncatula
MTR_3g052870
N
0.729
orange1.1g039654m.g
Citrus sinensis
orange1.1g039654m.g
N
0.729
MTR_8g043650
Medicago truncatula
MTR_8g043650
N
0.729
Gorai.002G213500
Gossypium raimondii
Gorai.002G213500
N
0.729
MTR_1g105910
Medicago truncatula
MTR_1g105910
N
0.729
SapurV1A.1313s0050
Salix purpurea
SapurV1A.1313s0050
N
0.729
Thhalv10015908m.g
Eutrema salsugineum
Thhalv10015908m.g
N
0.729
F775_43210
Aegilops tauschii
F775_43210
I
0.729
Bra032057
Brassica rapa
Bra032057
N
0.729
AMTR_s00025p00244880
Amborella trichopoda
AMTR_s00025p00244880
N
0.729
GLYMA10G40060
Glycine max
GLYMA10G40060
N
0.729
GLYMA10G40070
Glycine max
GLYMA10G40070
N
0.729
GLYMA20G27330
Glycine max
GLYMA20G27330
N
0.729
GLYMA17G01771
Glycine max
GLYMA17G01771
N
0.729
GLYMA13G39016
Glycine max
GLYMA13G39016
N
0.729
MDP0000434703
Malus domestica
MDP0000434703
I
0.729
MTR_3g052920
Medicago truncatula
MTR_3g052920
N
0.729
Lus10030824.g
Linum usitatissimum
Lus10030824.g
N
0.729
Lus10012449.g
Linum usitatissimum
Lus10012449.g
N
0.729
PGSC0003DMG400036160
Solanum tuberosum
PGSC0003DMG400036160
N
0.729
PGSC0003DMG400041035
Solanum tuberosum
PGSC0003DMG400041035
N
0.729
Lus10030663.g
Linum usitatissimum
Lus10030663.g
N
0.729
PRUPE_ppa017246mg
Prunus persica
PRUPE_ppa017246mg
N
0.729
MDP0000168914
Malus domestica
MDP0000168914
N
0.729
PRUPE_ppa026089mg
Prunus persica
PRUPE_ppa026089mg
N
0.729
scaffold_302326.1
Arabidopsis lyrata
scaffold_302326.1
I
0.729
MTR_1g108500
Medicago truncatula
MTR_1g108500
N
0.727
POPTR_0007s03410
Populus trichocarpa
POPTR_0007s03410
N
0.714
MLOC_78558
Hordeum vulgare
MLOC_78558
N
0.711
chr5.LjT25B19.190.nd
Lotus japonicus
chr5.LjT25B19.190.nd
N
0.708
Eucgr.G01185
Eucalyptus grandis
Eucgr.G01185
N
0.708
gene14058-v1.0-hybrid
Fragaria vesca
gene14058-v1.0-hybrid
I
0.708
evm.TU.contig_37271
Carica papaya
evm.TU.contig_37271
N
0.708
Thhalv10027307m.g
Eutrema salsugineum
Thhalv10027307m.g
N
0.708
Lus10020511.g
Linum usitatissimum
Lus10020511.g
N
0.708
evm.TU.contig_35751
Carica papaya
evm.TU.contig_35751
N
0.708
gene07364-v1.0-hybrid
Fragaria vesca
gene07364-v1.0-hybrid
N
0.708
evm.TU.contig_35713
Carica papaya
evm.TU.contig_35713
N
0.708
Thhalv10022102m.g
Eutrema salsugineum
Thhalv10022102m.g
N
0.708
chr2.CM0904.120.nd
Lotus japonicus
chr2.CM0904.120.nd
N
0.708
SapurV1A.0019s0690
Salix purpurea
SapurV1A.0019s0690
N
0.708
evm.TU.supercontig_625.4
Carica papaya
evm.TU.supercontig_625.4
N
0.708
evm.TU.supercontig_347.11
Carica papaya
evm.TU.supercontig_347.11
N
0.708
evm.TU.supercontig_348.8
Carica papaya
evm.TU.supercontig_348.8
N
0.708
orange1.1g036705m.g
Citrus sinensis
orange1.1g036705m.g
N
0.708
MDP0000278770
Malus domestica
MDP0000278770
N
0.708
evm.TU.supercontig_347.7
Carica papaya
evm.TU.supercontig_347.7
N
0.708
MDP0000233925
Malus domestica
MDP0000233925
N
0.708
Lus10031073.g
Linum usitatissimum
Lus10031073.g
N
0.708
evm.TU.supercontig_20.85
Carica papaya
evm.TU.supercontig_20.85
N
0.708
MDP0000274606
Malus domestica
MDP0000274606
N
0.708
evm.TU.supercontig_654.6
Carica papaya
evm.TU.supercontig_654.6
N
0.708
evm.TU.supercontig_654.4
Carica papaya
evm.TU.supercontig_654.4
N
0.708
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.708
evm.TU.supercontig_106.18
Carica papaya
evm.TU.supercontig_106.18
N
0.708
VIT_03s0088g00550
Vitis vinifera
VIT_03s0088g00550
N
0.708
MTR_7g028448
Medicago truncatula
MTR_7g028448
I
0.708
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.708
MTR_4g036915
Medicago truncatula
MTR_4g036915
I
0.708
MTR_1g054265
Medicago truncatula
MTR_1g054265
I
0.708
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.708
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.708
OGLUM06G17310
Oryza glumaepatula
OGLUM06G17310
N
0.708
ORGLA06G0135200
Oryza glaberrima
ORGLA06G0135200
N
0.708
ORUFI06G17170
Oryza rufipogon
ORUFI06G17170
N
0.708
OPUNC09G00580
Oryza punctata
OPUNC09G00580
N
0.708
ONIVA06G15740
Oryza nivara
ONIVA06G15740
N
0.708
OMERI06G17150
Oryza meridionalis
OMERI06G17150
N
0.708
GSMUA_Achr5G26530_001
Musa acuminata
GSMUA_Achr5G26530_001
I
0.708
GRMZM2G459864
Zea mays
GRMZM2G459864
N
0.708
Bo5g113750
Brassica oleracea
Bo5g113750
N
0.708
Bra002480
Brassica rapa
Bra002480
N
0.708
AGL29
Arabidopsis thaliana
AT2G34440
I
0.708
Al_scaffold_0002_1221
Arabidopsis lyrata
Al_scaffold_0002_1221
N
0.708
Al_scaffold_0001_74
Arabidopsis lyrata
Al_scaffold_0001_74
N
0.708
BRADI1G27900
Brachypodium distachyon
BRADI1G27900
N
0.708
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
0.708
GLYMA20G27320
Glycine max
GLYMA20G27320
N
0.708
GLYMA10G40080
Glycine max
GLYMA10G40080
N
0.708
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.708
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.708
OS06G0504100
Oryza sativa
OS06G0504100
N
0.708
PGSC0003DMG400005131
Solanum tuberosum
PGSC0003DMG400005131
N
0.708
Ca_04661
Cicer arietinum
Ca_04661
N
0.708
Ca_04660
Cicer arietinum
Ca_04660
N
0.708
Ca_04659
Cicer arietinum
Ca_04659
N
0.708
Ciclev10030387m.g
Citrus clementina
Ciclev10030387m.g
N
0.708
Pm016629
Prunus mume
Pm016629
N
0.708
Pm026057
Prunus mume
Pm026057
N
0.708
Aquca_002_01450
Aquilegia coerulea
Aquca_002_01450
N
0.708
gw1.88.220.1
Physcomitrella patens
gw1.88.220.1
N
0.708
30099.m001672
Ricinus communis
30099.m001672
N
0.708
Bostr.7867s1515
Boechera stricta
Bostr.7867s1515
N
0.708
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
0.708
SELMODRAFT_450772
Selaginella moellendorffii
SELMODRAFT_450772
N
0.708
PRUPE_ppa023670mg
Prunus persica
PRUPE_ppa023670mg
N
0.708
POPTR_0007s03430
Populus trichocarpa
POPTR_0007s03430
N
0.708
PGSC0003DMG400043633
Solanum tuberosum
PGSC0003DMG400043633
N
0.708
SELMODRAFT_450775
Selaginella moellendorffii
SELMODRAFT_450775
N
0.708
SELMODRAFT_450776
Selaginella moellendorffii
SELMODRAFT_450776
N
0.708
Solyc01g106720.1
Solanum lycopersicum
Solyc01g106720.1
N
0.708
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
0.708
SELMODRAFT_450777
Selaginella moellendorffii
SELMODRAFT_450777
N
0.708
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
0.708
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.707
Traes_7DL_A773A64E2
Triticum aestivum
Traes_7DL_A773A64E2
N
0.707
Solyc01g060310.1
Solanum lycopersicum
Solyc01g060310.1
N
0.702
Traes_7BS_4D5DE99CC
Triticum aestivum
Traes_7BS_4D5DE99CC
I
0.700