CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.19427s0033
(
Boechera stricta
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Bostr.19427s0033
T257594_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL16
M06987_2.00
Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA
Dap-seq
OMalley et al.(2016)
AGL16_col_a
0.771
0.771
AGL16
M06988_2.00
Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW
Dap-seq
OMalley et al.(2016)
AGL16_colamp_a
0.771
0.771
Q9FVN1_MAIZE
M10982_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_03
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.19427s0033.1.p
MADS box
10
57
KIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEICLIIFSNTDKLYDF
Bostr.19427s0033.2.p
MADS box
10
57
KIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEICLIIFSNTDKLYDF
Links
Other
MADS box
family TFs
Other
Boechera stricta
TFs
277 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy