Bostr.3751s0031 (Boechera stricta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Bostr.3751s0031 T257634_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.3751s0031.1.p MADS box 49 98

Links

Other MADS box family TFs
Other Boechera stricta TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.3751s0039 Boechera stricta Bostr.3751s0039 I 0.958
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I 0.958
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.957
Bostr.3751s0025 Boechera stricta Bostr.3751s0025 I 0.938
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.894
Bo00615s090 Brassica oleracea Bo00615s090 I 0.830
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 0.830
AGL76 Arabidopsis thaliana AT5G40120 I 0.830
Bra031864 Brassica rapa Bra031864 I 0.830
AGL81 Arabidopsis thaliana AT5G39750 I 0.830
AGL77 Arabidopsis thaliana AT5G38740 I 0.830
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 0.826
AGL43 Arabidopsis thaliana AT5G40220 I 0.818
AGL98 Arabidopsis thaliana AT5G39810 I 0.809
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I 0.804
AGL75 Arabidopsis thaliana AT5G41200 I 0.795
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I 0.771
AGL78 Arabidopsis thaliana AT5G65330 D 0.771
AGL105 Arabidopsis thaliana AT5G37415 I 0.769
AGL101 Arabidopsis thaliana AT5G27050 I 0.767
Thhalv10005313m.g Eutrema salsugineum Thhalv10005313m.g I 0.766
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.761
AGL51 Arabidopsis thaliana AT4G02235 I 0.750
Carubv10007591m.g Capsella rubella Carubv10007591m.g I 0.745
Carubv10006654m.g Capsella rubella Carubv10006654m.g I 0.745
AGL52 Arabidopsis thaliana AT4G11250 I 0.745
Thhalv10028282m.g Eutrema salsugineum Thhalv10028282m.g I 0.739
Thhalv10028184m.g Eutrema salsugineum Thhalv10028184m.g I 0.733
Bra025609 Brassica rapa Bra025609 I 0.723
Bra025619 Brassica rapa Bra025619 N 0.721
Cagra.29077s0001 Capsella grandiflora Cagra.29077s0001 N 0.702