CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0096s0039
(
Capsella grandiflora
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Cagra.0096s0039
T257650_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL67
M10907_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT1G77950_01
0.958
0.958
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0096s0039.1.p
MADS box
10
57
RIEKTTNRQITYSKRKKGLIKKAYELSTLCDIDLALLMFSPSDRLCLF
Links
Other
MADS box
family TFs
Other
Capsella grandiflora
TFs
120 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10021761m.g
Capsella rubella
Carubv10021761m.g
I
1.000
fgenesh2_kg.2__2429__AT1G77950.2
Arabidopsis lyrata
fgenesh2_kg.2__2429__AT1G77950.2
I
0.958
AGL67
Arabidopsis thaliana
AT1G77950
D
0.958
fgenesh2_kg.2__2089__AT1G77950.1
Arabidopsis lyrata
fgenesh2_kg.2__2089__AT1G77950.1
I
0.958
Thhalv10019795m.g
Eutrema salsugineum
Thhalv10019795m.g
I
0.938
Bo6g121610
Brassica oleracea
Bo6g121610
I
0.917
Bra015645
Brassica rapa
Bra015645
I
0.917
Cagra.0096s0037
Capsella grandiflora
Cagra.0096s0037
I
0.833
AGL66
Arabidopsis lyrata
fgenesh2_kg.2__2091__AT1G77980.1
I
0.833
Carubv10021590m.g
Capsella rubella
Carubv10021590m.g
I
0.833
AGL66
Arabidopsis thaliana
AT1G77980
I
0.833
Carubv10010907m.g
Capsella rubella
Carubv10010907m.g
I
0.812
Thhalv10019686m.g
Eutrema salsugineum
Thhalv10019686m.g
I
0.812
AGL104
Arabidopsis lyrata
Al_scaffold_0001_2320
I
0.812
Bo8g071330
Brassica oleracea
Bo8g071330
I
0.812
Bo6g121640
Brassica oleracea
Bo6g121640
I
0.812
AGL104
Arabidopsis thaliana
AT1G22130
I
0.812
Bra012308
Brassica rapa
Bra012308
I
0.812
Bra015643
Brassica rapa
Bra015643
I
0.812
Bo7g060150
Brassica oleracea
Bo7g060150
I
0.812
Bra016386
Brassica rapa
Bra016386
I
0.812
Cagra.1707s0007
Capsella grandiflora
Cagra.1707s0007
I
0.812
OB08G26170
Oryza brachyantha
OB08G26170
I
0.792
OGLUM08G20110
Oryza glumaepatula
OGLUM08G20110
I
0.792
OBART08G19110
Oryza barthii
OBART08G19110
I
0.792
Bostr.20129s0232
Boechera stricta
Bostr.20129s0232
I
0.792
LPERR08G16000
Leersia perrieri
LPERR08G16000
I
0.792
ORUFI08G21330
Oryza rufipogon
ORUFI08G21330
I
0.792
OS08G0494100
Oryza sativa
OS08G0494100
I
0.792
ORGLA08G0167200
Oryza glaberrima
ORGLA08G0167200
I
0.792
BGIOSGA026745
Oryza indica
BGIOSGA026745
I
0.792
Si008439m.g
Setaria italica
Si008439m.g
I
0.792
Ca_24539
Cicer arietinum
Ca_24539
I
0.771
PRUPE_ppa007816mg
Prunus persica
PRUPE_ppa007816mg
I
0.771
TRIUR3_20588
Triticum urartu
TRIUR3_20588
I
0.771
Cla014721
Citrullus lanatus
Cla014721
I
0.771
Traes_4DS_A28BC582A
Triticum aestivum
Traes_4DS_A28BC582A
I
0.771
Bostr.12659s0064
Boechera stricta
Bostr.12659s0064
I
0.771
Gorai.009G216900
Gossypium raimondii
Gorai.009G216900
I
0.771
Pavir.Db01574
Panicum virgatum
Pavir.Db01574
I
0.771
Pavir.Fb01739
Panicum virgatum
Pavir.Fb01739
I
0.771
Gorai.005G100600
Gossypium raimondii
Gorai.005G100600
I
0.771
Aquca_014_00554
Aquilegia coerulea
Aquca_014_00554
I
0.771
Pm019181
Prunus mume
Pm019181
I
0.771
29908.m005982
Ricinus communis
29908.m005982
I
0.771
30170.m013776
Ricinus communis
30170.m013776
I
0.771
Pm005355
Prunus mume
Pm005355
I
0.771
Si013985m.g
Setaria italica
Si013985m.g
I
0.771
BRADI3G39177
Brachypodium distachyon
BRADI3G39177
I
0.771
F775_03584
Aegilops tauschii
F775_03584
I
0.771
ONIVA08G21050
Oryza nivara
ONIVA08G21050
I
0.771
OPUNC08G17110
Oryza punctata
OPUNC08G17110
I
0.771
OLONG_004474
Oryza longistaminata
OLONG_004474
I
0.771
MTR_4g084740
Medicago truncatula
MTR_4g084740
I
0.771
LPERR06G07270
Leersia perrieri
LPERR06G07270
I
0.771
PK24279.1
Cannabis sativa
PK24279.1
I
0.765
OS06G0223300
Oryza sativa
OS06G0223300
I
0.750
OGLUM06G08350
Oryza glumaepatula
OGLUM06G08350
I
0.750
OBART06G07860
Oryza barthii
OBART06G07860
I
0.750
OB06G17440
Oryza brachyantha
OB06G17440
I
0.750
SapurV1A.0010s0340
Salix purpurea
SapurV1A.0010s0340
I
0.750
Pavir.J32837
Panicum virgatum
Pavir.J32837
I
0.750
orange1.1g039560m.g
Citrus sinensis
orange1.1g039560m.g
I
0.750
gene31290-v1.0-hybrid
Fragaria vesca
gene31290-v1.0-hybrid
I
0.750
MDP0000243965
Malus domestica
MDP0000243965
I
0.750
Lus10018714.g
Linum usitatissimum
Lus10018714.g
I
0.750
Ciclev10003964m.g
Citrus clementina
Ciclev10003964m.g
I
0.750
GRMZM2G152415
Zea mays
GRMZM2G152415
I
0.750
GSMUA_Achr3G04450_001
Musa acuminata
GSMUA_Achr3G04450_001
I
0.750
GRMZM2G334225
Zea mays
GRMZM2G334225
I
0.750
GSMUA_Achr9G13010_001
Musa acuminata
GSMUA_Achr9G13010_001
I
0.750
cassava25616.m1
Manihot esculenta
cassava25616.m1
I
0.750
PRUPE_ppa023054mg
Prunus persica
PRUPE_ppa023054mg
I
0.750
ORGLA06G0074200
Oryza glaberrima
ORGLA06G0074200
I
0.750
PRUPE_ppa020874mg
Prunus persica
PRUPE_ppa020874mg
I
0.750
TCM_034970
Theobroma cacao
TCM_034970
I
0.750
TCM_001182
Theobroma cacao
TCM_001182
I
0.750
Sb10g007810
Sorghum bicolor
Sb10g007810
I
0.750
ORUFI06G08110
Oryza rufipogon
ORUFI06G08110
I
0.750
OPUNC06G07570
Oryza punctata
OPUNC06G07570
I
0.750
BGIOSGA003731
Oryza indica
BGIOSGA003731
I
0.750
POPTR_0002s09290
Populus trichocarpa
POPTR_0002s09290
I
0.750
ONIVA06G09080
Oryza nivara
ONIVA06G09080
I
0.750
Ciclev10001730m.g
Citrus clementina
Ciclev10001730m.g
I
0.729
MDP0000152821
Malus domestica
MDP0000152821
I
0.729
Lus10016810.g
Linum usitatissimum
Lus10016810.g
I
0.729
Gorai.005G093000
Gossypium raimondii
Gorai.005G093000
I
0.729
POPTR_0007s05980
Populus trichocarpa
POPTR_0007s05980
I
0.729
AMTR_s00010p00214260
Amborella trichopoda
AMTR_s00010p00214260
I
0.729
evm.TU.supercontig_21.133
Carica papaya
evm.TU.supercontig_21.133
I
0.729
GLYMA14G34160
Glycine max
GLYMA14G34160
I
0.729
orange1.1g046530m.g
Citrus sinensis
orange1.1g046530m.g
I
0.729
Lus10022506.g
Linum usitatissimum
Lus10022506.g
I
0.729
cassava32041.m1
Manihot esculenta
cassava32041.m1
I
0.729
cassava22012.m1
Manihot esculenta
cassava22012.m1
I
0.729
Ca_01572
Cicer arietinum
Ca_01572
I
0.729
OMERI08G15140
Oryza meridionalis
OMERI08G15140
I
0.729
SapurV1A.0293s0130
Salix purpurea
SapurV1A.0293s0130
I
0.729
e_gw1.55.5.1
Physcomitrella patens
e_gw1.55.5.1
I
0.729
TCM_034757
Theobroma cacao
TCM_034757
I
0.729
mgf017317m
Mimulus guttatus
mgf017317m
I
0.729
OMERI06G09450
Oryza meridionalis
OMERI06G09450
I
0.729
VIT_07s0031g01140
Vitis vinifera
VIT_07s0031g01140
I
0.729
VIT_18s0001g09540
Vitis vinifera
VIT_18s0001g09540
I
0.729
estExt_fgenesh1_pg.C_1180093
Physcomitrella patens
estExt_fgenesh1_pg.C_1180093
I
0.729
Lus10024823.g
Linum usitatissimum
Lus10024823.g
I
0.708
estExt_Genewise1.C_80073
Physcomitrella patens
estExt_Genewise1.C_80073
I
0.708
e_gw1.273.6.1
Physcomitrella patens
e_gw1.273.6.1
I
0.708
estExt_fgenesh1_kg.C_550007
Physcomitrella patens
estExt_fgenesh1_kg.C_550007
I
0.708
Solyc04g078300.2
Solanum lycopersicum
Solyc04g078300.2
I
0.708
SELMODRAFT_449721
Selaginella moellendorffii
SELMODRAFT_449721
N
0.708
SELMODRAFT_449720
Selaginella moellendorffii
SELMODRAFT_449720
N
0.708
estExt_fgenesh1_pm.C_80015
Physcomitrella patens
estExt_fgenesh1_pm.C_80015
I
0.708
estExt_gwp_gw1.C_900087
Physcomitrella patens
estExt_gwp_gw1.C_900087
I
0.708
Gorai.007G242000
Gossypium raimondii
Gorai.007G242000
I
0.708
GLYMA13G02170
Glycine max
GLYMA13G02170
I
0.708
Aquca_032_00047
Aquilegia coerulea
Aquca_032_00047
I
0.708
fgenesh1_pg.scaffold_163000049
Physcomitrella patens
fgenesh1_pg.scaffold_163000049
I
0.708
GLYMA04G04641
Glycine max
GLYMA04G04641
I
0.708
H311_00382
Anncaliia algerae
H311_00382
I
0.704