CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0133s0015
(
Capsella grandiflora
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Cagra.0133s0015
T257652_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.979
0.979
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0133s0015.1.p
MADS box
10
57
EVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSF
Links
Other
MADS box
family TFs
Other
Capsella grandiflora
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10014761m.g
Capsella rubella
Carubv10014761m.g
I
1.000
AGL91
Arabidopsis lyrata
fgenesh2_kg.3__679__AT3G66656.1
I
0.979
AGL91
Arabidopsis thaliana
AT3G66656
D
0.979
Thhalv10022154m.g
Eutrema salsugineum
Thhalv10022154m.g
I
0.979
Bostr.22252s0371
Boechera stricta
Bostr.22252s0371
I
0.958
Bra001209
Brassica rapa
Bra001209
I
0.896
Bo3g060720
Brassica oleracea
Bo3g060720
I
0.875
Bra021910
Brassica rapa
Bra021910
I
0.854
Thhalv10017825m.g
Eutrema salsugineum
Thhalv10017825m.g
I
0.854
Bo4g182590
Brassica oleracea
Bo4g182590
I
0.854
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
0.833
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
0.833
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
0.833
AGL29
Arabidopsis thaliana
AT2G34440
I
0.833
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
0.833
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.812
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.812
Ca_05023
Cicer arietinum
Ca_05023
I
0.792
Ca_24185
Cicer arietinum
Ca_24185
I
0.792
gene14058-v1.0-hybrid
Fragaria vesca
gene14058-v1.0-hybrid
I
0.771
GLYMA08G03820
Glycine max
GLYMA08G03820
I
0.771
LjSGA_017605.1
Lotus japonicus
LjSGA_017605.1
I
0.771
gene30567-v1.0-hybrid
Fragaria vesca
gene30567-v1.0-hybrid
I
0.750
MTR_1g054265
Medicago truncatula
MTR_1g054265
I
0.750
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.750
chr4.LjT16L01.50.nd
Lotus japonicus
chr4.LjT16L01.50.nd
I
0.750
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.750
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.750
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.750
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.729
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
0.729
orange1.1g037442m.g
Citrus sinensis
orange1.1g037442m.g
I
0.729
TCM_029518
Theobroma cacao
TCM_029518
I
0.729
MTR_4g131030
Medicago truncatula
MTR_4g131030
I
0.729
GLYMA18G20830
Glycine max
GLYMA18G20830
I
0.729
GLYMA08G38880
Glycine max
GLYMA08G38880
I
0.729
GLYMA05G35820
Glycine max
GLYMA05G35820
I
0.729
29693.m002039
Ricinus communis
29693.m002039
I
0.729
MTR_1g063160
Medicago truncatula
MTR_1g063160
I
0.729
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.711
PDK_20s1551551g001
Phoenix dactylifera
PDK_20s1551551g001
I
0.708
Pm030655
Prunus mume
Pm030655
I
0.708
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.708
cassava10519.m1
Manihot esculenta
cassava10519.m1
I
0.708