Cagra.0133s0015 (Capsella grandiflora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cagra.0133s0015 T257652_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.979 0.979
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0133s0015.1.p MADS box 10 57

Links

Other MADS box family TFs
Other Capsella grandiflora TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10014761m.g Capsella rubella Carubv10014761m.g I 1.000
AGL91 Arabidopsis lyrata fgenesh2_kg.3__679__AT3G66656.1 I 0.979
AGL91 Arabidopsis thaliana AT3G66656 D 0.979
Thhalv10022154m.g Eutrema salsugineum Thhalv10022154m.g I 0.979
Bostr.22252s0371 Boechera stricta Bostr.22252s0371 I 0.958
Bra001209 Brassica rapa Bra001209 I 0.896
Bo3g060720 Brassica oleracea Bo3g060720 I 0.875
Bra021910 Brassica rapa Bra021910 I 0.854
Thhalv10017825m.g Eutrema salsugineum Thhalv10017825m.g I 0.854
Bo4g182590 Brassica oleracea Bo4g182590 I 0.854
Carubv10025656m.g Capsella rubella Carubv10025656m.g I 0.833
AGL29 Arabidopsis lyrata fgenesh2_kg.4__1464__AT2G34440.1 I 0.833
Cagra.7352s0007 Capsella grandiflora Cagra.7352s0007 I 0.833
AGL29 Arabidopsis thaliana AT2G34440 I 0.833
Bostr.23794s0666 Boechera stricta Bostr.23794s0666 I 0.833
GLYMA08G03830 Glycine max GLYMA08G03830 I 0.812
GLYMA05G35811 Glycine max GLYMA05G35811 I 0.812
Ca_05023 Cicer arietinum Ca_05023 I 0.792
Ca_24185 Cicer arietinum Ca_24185 I 0.792
gene14058-v1.0-hybrid Fragaria vesca gene14058-v1.0-hybrid I 0.771
GLYMA08G03820 Glycine max GLYMA08G03820 I 0.771
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I 0.771
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I 0.750
MTR_1g054265 Medicago truncatula MTR_1g054265 I 0.750
MTR_1g047550 Medicago truncatula MTR_1g047550 I 0.750
chr4.LjT16L01.50.nd Lotus japonicus chr4.LjT16L01.50.nd I 0.750
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.750
MTR_8g051580 Medicago truncatula MTR_8g051580 I 0.750
MTR_8g079502 Medicago truncatula MTR_8g079502 I 0.750
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I 0.729
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I 0.729
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I 0.729
TCM_029518 Theobroma cacao TCM_029518 I 0.729
MTR_4g131030 Medicago truncatula MTR_4g131030 I 0.729
GLYMA18G20830 Glycine max GLYMA18G20830 I 0.729
GLYMA08G38880 Glycine max GLYMA08G38880 I 0.729
GLYMA05G35820 Glycine max GLYMA05G35820 I 0.729
29693.m002039 Ricinus communis 29693.m002039 I 0.729
MTR_1g063160 Medicago truncatula MTR_1g063160 I 0.729
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
PDK_20s1551551g001 Phoenix dactylifera PDK_20s1551551g001 I 0.708
Pm030655 Prunus mume Pm030655 I 0.708
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.708
cassava10519.m1 Manihot esculenta cassava10519.m1 I 0.708