Cagra.0917s0081 (Capsella grandiflora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cagra.0917s0081 T257669_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL27
M08145_2.00 		Arabidopsis thaliana
MCMAAAATRGAAAB
VTTTCYATTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA1012.1 		0.851 0.851
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.809 0.809
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.809 0.809
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.809 0.809
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0917s0081.1.p MADS box 10 56

Links

Other MADS box family TFs
Other Capsella grandiflora TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.0568s0285 Boechera stricta Bostr.0568s0285 I 0.979
AGL31 Arabidopsis thaliana AT5G65050 I 0.936
fgenesh2_kg.233__4__AT5G65050.3 Arabidopsis lyrata fgenesh2_kg.233__4__AT5G65050.3 I 0.915
fgenesh2_kg.8__2543__AT5G65050.2 Arabidopsis lyrata fgenesh2_kg.8__2543__AT5G65050.2 I 0.915
Bra031888 Brassica rapa Bra031888 I 0.894
Bo2g166500 Brassica oleracea Bo2g166500 I 0.872
MAF3 Arabidopsis thaliana AT5G65060 I 0.872
Bo3g100570 Brassica oleracea Bo3g100570 I 0.851
Bra024350 Brassica rapa Bra024350 I 0.851
Cagra.0450s0030 Capsella grandiflora Cagra.0450s0030 I 0.851
MAF1 Arabidopsis lyrata fgenesh2_kg.2__2000__AT1G77080.2 I 0.851
AGL27 Arabidopsis thaliana AT1G77080 D 0.851
Carubv10020979m.g Capsella rubella Carubv10020979m.g I 0.851
Bra028599 Brassica rapa Bra028599 I 0.812
Bo9g173370 Brassica oleracea Bo9g173370 I 0.809
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.792
Bostr.13175s0088 Boechera stricta Bostr.13175s0088 I 0.792
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.792
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.792
FLC Arabidopsis lyrata scaffold_601028.1 I 0.792
Bra009055 Brassica rapa Bra009055 I 0.792
FLC Arabidopsis thaliana AT5G10140 D 0.792
Thhalv10005413m.g Eutrema salsugineum Thhalv10005413m.g I 0.787
Bo13628s010 Brassica oleracea Bo13628s010 I 0.787
Bo3g005470 Brassica oleracea Bo3g005470 I 0.787
Bra006051 Brassica rapa Bra006051 I 0.787
Bo9g173400 Brassica oleracea Bo9g173400 I 0.787
Bra031886 Brassica rapa Bra031886 I 0.787
Cagra.0917s0080 Capsella grandiflora Cagra.0917s0080 I 0.766
Bra024351 Brassica rapa Bra024351 I 0.766
MAF5 Arabidopsis thaliana AT5G65080 I 0.766
Bra031884 Brassica rapa Bra031884 I 0.766
Bo3g100540 Brassica oleracea Bo3g100540 I 0.766
Bra022771 Brassica rapa Bra022771 I 0.750
Bo01054s010 Brassica oleracea Bo01054s010 I 0.745
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.745
Carubv10028173m.g Capsella rubella Carubv10028173m.g I 0.729
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.729
Bo3g024250 Brassica oleracea Bo3g024250 I 0.723
MAF4 Arabidopsis thaliana AT5G65070 I 0.708
MAF4 Arabidopsis lyrata Al_scaffold_0008_3055 I 0.708