Cagra.4153s0004 (Capsella grandiflora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cagra.4153s0004 T257703_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.938 0.938
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.4153s0004.1.p MADS box 10 57

Links

Other MADS box family TFs
Other Capsella grandiflora TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29813.m001508 Ricinus communis 29813.m001508 I 0.739
30138.m004061 Ricinus communis 30138.m004061 I 0.854
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.826
AGL30 Arabidopsis thaliana AT2G03060 I 0.826
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.917
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.792
AGL65 Arabidopsis thaliana AT1G18750 D 0.938
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.739
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.750
Bo6g109050 Brassica oleracea Bo6g109050 I 0.717
Bo7g080890 Brassica oleracea Bo7g080890 I 0.761
Bo8g068060 Brassica oleracea Bo8g068060 I 0.854
Bo8g104060 Brassica oleracea Bo8g104060 I 0.854
Bo9g072860 Brassica oleracea Bo9g072860 N 0.739
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.771
Bostr.10273s0411 Boechera stricta Bostr.10273s0411 I 0.717
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.938
Bra004393 Brassica rapa Bra004393 I 0.717
Bra016544 Brassica rapa Bra016544 I 0.854
Bra017404 Brassica rapa Bra017404 I 0.761
Bra024792 Brassica rapa Bra024792 I 0.761
Bra025685 Brassica rapa Bra025685 I 0.812
Bra031049 Brassica rapa Bra031049 I 0.854
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.771
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.708
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 1.000
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.771
Carubv10020210m.g Capsella rubella Carubv10020210m.g I 0.739
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.833
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.812
Ca_16376 Cicer arietinum Ca_16376 I 0.717
Ca_18082 Cicer arietinum Ca_18082 I 0.708
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.771
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.833
Cla010361 Citrullus lanatus Cla010361 I 0.750
Cla018884 Citrullus lanatus Cla018884 I 0.708
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.708
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.761
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.771
F775_13266 Aegilops tauschii F775_13266 I 0.717
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.750
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.783
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.792
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.792
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.702
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.729
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.739
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.792
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.771
MDP0000146231 Malus domestica MDP0000146231 I 0.729
MDP0000146415 Malus domestica MDP0000146415 I 0.778
MDP0000147667 Malus domestica MDP0000147667 I 0.750
MDP0000193129 Malus domestica MDP0000193129 I 0.792
MDP0000773068 Malus domestica MDP0000773068 I 0.778
MDP0000919323 Malus domestica MDP0000919323 I 0.778
mgf000945m Mimulus guttatus mgf000945m I 0.729
mgf004425m Mimulus guttatus mgf004425m I 0.729
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.792
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.708
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.833
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.739
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.787
PK21701.1 Cannabis sativa PK21701.1 I 0.792
Pm006479 Prunus mume Pm006479 I 0.761
Pm024895 Prunus mume Pm024895 I 0.771
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.739
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.771
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.761
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.761
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.708
TCM_011687 Theobroma cacao TCM_011687 I 0.717
TCM_014051 Theobroma cacao TCM_014051 I 0.812
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.783
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.854
Thhalv10018691m.g Eutrema salsugineum Thhalv10018691m.g I 0.717
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.739
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.771
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.717
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.717
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.717
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.717