CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10012265m.g
(
Capsella rubella
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Carubv10012265m.g
T257769_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL63
M06982_2.00
Arabidopsis thaliana
TDCCAAAAWHGGMAA
TTKCCDWTTTTGGHA
Dap-seq
OMalley et al.(2016)
AGL63_col_a
0.833
0.833
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10012265m
MADS box
10
57
RIEDRIRRQVTFAKRRKSLMKKAHELSVLCDVHLGLIIFSYSNRLYDF
Links
Other
MADS box
family TFs
Other
Capsella rubella
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.1508s0081
Capsella grandiflora
Cagra.1508s0081
I
1.000
Bostr.15697s0422
Boechera stricta
Bostr.15697s0422
I
0.896
AGL63
Arabidopsis thaliana
AT1G31140
D
0.833
gene01336-v1.0-hybrid
Fragaria vesca
gene01336-v1.0-hybrid
I
0.750
MDP0000179718
Malus domestica
MDP0000179718
I
0.727
Traes_4BL_9A17EA3B7
Triticum aestivum
Traes_4BL_9A17EA3B7
I
0.724
PK28790.1
Cannabis sativa
PK28790.1
I
0.708
BRADI1G77020
Brachypodium distachyon
BRADI1G77020
I
0.708
PRUPE_ppa015338mg
Prunus persica
PRUPE_ppa015338mg
I
0.708