Carubv10012265m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10012265m.g T257769_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL63
M06982_2.00
Arabidopsis thaliana
TDCCAAAAWHGGMAA

TTKCCDWTTTTGGHA
Dap-seq
OMalley et al.(2016)
AGL63_col_a
0.833 0.833
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10012265m MADS box 10 57

Links

Other MADS box family TFs
Other Capsella rubella TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.1508s0081 Capsella grandiflora Cagra.1508s0081 I 1.000
Bostr.15697s0422 Boechera stricta Bostr.15697s0422 I 0.896
AGL63 Arabidopsis thaliana AT1G31140 D 0.833
gene01336-v1.0-hybrid Fragaria vesca gene01336-v1.0-hybrid I 0.750
MDP0000179718 Malus domestica MDP0000179718 I 0.727
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
PK28790.1 Cannabis sativa PK28790.1 I 0.708
BRADI1G77020 Brachypodium distachyon BRADI1G77020 I 0.708
PRUPE_ppa015338mg Prunus persica PRUPE_ppa015338mg I 0.708