Carubv10021590m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10021590m.g T257800_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL67
M10907_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT1G77950_01
0.833 0.833
O82698_MALDO
M11021_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS10_01
0.729 0.729
AGL3
M02693_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN

NNWNCYWWWWWTGGNWHB
SELEX
Mathelier et al.(2014)
MA0001.2
0.708 0.708
AGL1
M02694_2.00
Arabidopsis thaliana
NDTDCCWWWWNDGGWAHN

NDTWCCHNWWWWGGHAHN
SELEX
Mathelier et al.(2014)
MA0585.1
0.708 0.708
AG
M02695_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHADN

NHTDCCHNWTWWGGWAAD
SELEX
Mathelier et al.(2014)
MA0005.2
0.708 0.708
AG
M10923_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN

NHTDCCHNWTWWGGWAAD
Transfac
Matys et al.(2006)
P$AG_01
0.708 0.708
AG
M10924_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_02
0.708 0.708
AG
M10925_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_03
0.708 0.708
AG_TOBAC
M10995_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG1_02
0.708 0.708
AGL1
M10920_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_01
0.708 0.708
AGL1
M10921_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL1_02
0.708 0.708
AGL3
M10908_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN

NNWNCYWWWWWTGGNWHB
Transfac
Matys et al.(2006)
P$AGL3_01
0.708 0.708
AGL3
M10909_2.00
Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN

NNWDCYAWWWWTGGNAHN
Transfac
Matys et al.(2006)
P$AGL3_02
0.708 0.708
AGL3
M10910_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL3_03
0.708 0.708
AG
M10926_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_Q2
0.708 0.708
Q08711_PETHY
M10999_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP6_01
0.708 0.708
Q8VWZ3_MALDO
M11025_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_02
0.708 0.708
Q8VWZ2_MALDO
M11024_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_02
0.708 0.708
MADS3_ORYSJ
M10963_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_01
0.708 0.708
AG_PETHY
M10994_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_02
0.708 0.708
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.708 0.708
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.708 0.708
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.708 0.708
SHP2
M10914_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SHP2_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021590m MADS box 10 57

Links

Other MADS box family TFs
Other Capsella rubella TFs

Invalid Input OrderBy

383 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action