Carubv10021715m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10021715m.g T257801_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021715m MADS box 12 64

Links

Other MADS box family TFs
Other Capsella rubella TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.10040s0123 Boechera stricta Bostr.10040s0123 I 0.875
Thhalv10023813m.g Eutrema salsugineum Thhalv10023813m.g I 0.833
AGL56 Arabidopsis lyrata fgenesh2_kg.2__374__AT1G60880.1 I 0.812
AGL55 Arabidopsis lyrata fgenesh2_kg.2__370__AT1G60920.1 I 0.812
Bo9g043530 Brassica oleracea Bo9g043530 I 0.792
AGL56 Arabidopsis thaliana AT1G60880 I 0.792
Bra040965 Brassica rapa Bra040965 I 0.792
Thhalv10023871m.g Eutrema salsugineum Thhalv10023871m.g I 0.729
AGL55 Arabidopsis thaliana AT1G60920 D 0.729
AGL97 Arabidopsis thaliana AT1G46408 N 0.729
Carubv10022197m.g Capsella rubella Carubv10022197m.g I 0.708
Carubv10025699m.g Capsella rubella Carubv10025699m.g N 0.708