Carubv10021761m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10021761m.g T257804_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL67
M10907_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT1G77950_01
0.958 0.958
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10021761m MADS box 10 57

Links

Other MADS box family TFs
Other Capsella rubella TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.0096s0039 Capsella grandiflora Cagra.0096s0039 I 1.000
fgenesh2_kg.2__2429__AT1G77950.2 Arabidopsis lyrata fgenesh2_kg.2__2429__AT1G77950.2 I 0.958
fgenesh2_kg.2__2089__AT1G77950.1 Arabidopsis lyrata fgenesh2_kg.2__2089__AT1G77950.1 I 0.958
AGL67 Arabidopsis thaliana AT1G77950 D 0.958
Thhalv10019795m.g Eutrema salsugineum Thhalv10019795m.g I 0.938
Bra015645 Brassica rapa Bra015645 I 0.917
Bo6g121610 Brassica oleracea Bo6g121610 I 0.917
AGL66 Arabidopsis thaliana AT1G77980 I 0.833
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.833
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.833
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.833
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.812
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.812
Bra016386 Brassica rapa Bra016386 I 0.812
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.812
Bo6g121640 Brassica oleracea Bo6g121640 I 0.812
Bo7g060150 Brassica oleracea Bo7g060150 I 0.812
Bo8g071330 Brassica oleracea Bo8g071330 I 0.812
Bra012308 Brassica rapa Bra012308 I 0.812
Bra015643 Brassica rapa Bra015643 I 0.812
AGL104 Arabidopsis thaliana AT1G22130 I 0.812
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.812
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.792
OBART08G19110 Oryza barthii OBART08G19110 I 0.792
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.792
Si008439m.g Setaria italica Si008439m.g I 0.792
OB08G26170 Oryza brachyantha OB08G26170 I 0.792
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.792
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.792
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.792
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.792
OS08G0494100 Oryza sativa OS08G0494100 I 0.792
Ca_24539 Cicer arietinum Ca_24539 I 0.771
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.771
Cla014721 Citrullus lanatus Cla014721 I 0.771
Traes_4DS_A28BC582A Triticum aestivum Traes_4DS_A28BC582A I 0.771
TRIUR3_20588 Triticum urartu TRIUR3_20588 I 0.771
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.771
Gorai.005G100600 Gossypium raimondii Gorai.005G100600 I 0.771
Gorai.009G216900 Gossypium raimondii Gorai.009G216900 I 0.771
Pavir.Db01574 Panicum virgatum Pavir.Db01574 I 0.771
Bostr.12659s0064 Boechera stricta Bostr.12659s0064 I 0.771
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.771
Pm019181 Prunus mume Pm019181 I 0.771
29908.m005982 Ricinus communis 29908.m005982 I 0.771
30170.m013776 Ricinus communis 30170.m013776 I 0.771
Pm005355 Prunus mume Pm005355 I 0.771
Si013985m.g Setaria italica Si013985m.g I 0.771
BRADI3G39177 Brachypodium distachyon BRADI3G39177 I 0.771
F775_03584 Aegilops tauschii F775_03584 I 0.771
ONIVA08G21050 Oryza nivara ONIVA08G21050 I 0.771
OPUNC08G17110 Oryza punctata OPUNC08G17110 I 0.771
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.771
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.771
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.771
PK24279.1 Cannabis sativa PK24279.1 I 0.765
OS06G0223300 Oryza sativa OS06G0223300 I 0.750
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.750
OBART06G07860 Oryza barthii OBART06G07860 I 0.750
OB06G17440 Oryza brachyantha OB06G17440 I 0.750
SapurV1A.0010s0340 Salix purpurea SapurV1A.0010s0340 I 0.750
Pavir.J32837 Panicum virgatum Pavir.J32837 I 0.750
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.750
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.750
MDP0000243965 Malus domestica MDP0000243965 I 0.750
Lus10018714.g Linum usitatissimum Lus10018714.g I 0.750
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.750
GRMZM2G152415 Zea mays GRMZM2G152415 I 0.750
GSMUA_Achr3G04450_001 Musa acuminata GSMUA_Achr3G04450_001 I 0.750
GRMZM2G334225 Zea mays GRMZM2G334225 I 0.750
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.750
cassava25616.m1 Manihot esculenta cassava25616.m1 I 0.750
PRUPE_ppa023054mg Prunus persica PRUPE_ppa023054mg I 0.750
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.750
PRUPE_ppa020874mg Prunus persica PRUPE_ppa020874mg I 0.750
TCM_034970 Theobroma cacao TCM_034970 I 0.750
TCM_001182 Theobroma cacao TCM_001182 I 0.750
Sb10g007810 Sorghum bicolor Sb10g007810 I 0.750
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.750
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.750
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.750
POPTR_0002s09290 Populus trichocarpa POPTR_0002s09290 I 0.750
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.750
Ciclev10001730m.g Citrus clementina Ciclev10001730m.g I 0.729
MDP0000152821 Malus domestica MDP0000152821 I 0.729
Lus10016810.g Linum usitatissimum Lus10016810.g I 0.729
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.729
POPTR_0007s05980 Populus trichocarpa POPTR_0007s05980 I 0.729
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.729
evm.TU.supercontig_21.133 Carica papaya evm.TU.supercontig_21.133 I 0.729
GLYMA14G34160 Glycine max GLYMA14G34160 I 0.729
orange1.1g046530m.g Citrus sinensis orange1.1g046530m.g I 0.729
Lus10022506.g Linum usitatissimum Lus10022506.g I 0.729
cassava32041.m1 Manihot esculenta cassava32041.m1 I 0.729
cassava22012.m1 Manihot esculenta cassava22012.m1 I 0.729
Ca_01572 Cicer arietinum Ca_01572 I 0.729
OMERI08G15140 Oryza meridionalis OMERI08G15140 I 0.729
SapurV1A.0293s0130 Salix purpurea SapurV1A.0293s0130 I 0.729
e_gw1.55.5.1 Physcomitrella patens e_gw1.55.5.1 I 0.729
TCM_034757 Theobroma cacao TCM_034757 I 0.729
mgf017317m Mimulus guttatus mgf017317m I 0.729
OMERI06G09450 Oryza meridionalis OMERI06G09450 I 0.729
VIT_07s0031g01140 Vitis vinifera VIT_07s0031g01140 I 0.729
VIT_18s0001g09540 Vitis vinifera VIT_18s0001g09540 I 0.729
estExt_fgenesh1_pg.C_1180093 Physcomitrella patens estExt_fgenesh1_pg.C_1180093 I 0.729
Lus10024823.g Linum usitatissimum Lus10024823.g I 0.708
estExt_Genewise1.C_80073 Physcomitrella patens estExt_Genewise1.C_80073 I 0.708
e_gw1.273.6.1 Physcomitrella patens e_gw1.273.6.1 I 0.708
estExt_fgenesh1_kg.C_550007 Physcomitrella patens estExt_fgenesh1_kg.C_550007 I 0.708
Solyc04g078300.2 Solanum lycopersicum Solyc04g078300.2 I 0.708
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.708
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.708
estExt_fgenesh1_pm.C_80015 Physcomitrella patens estExt_fgenesh1_pm.C_80015 I 0.708
estExt_gwp_gw1.C_900087 Physcomitrella patens estExt_gwp_gw1.C_900087 I 0.708
Gorai.007G242000 Gossypium raimondii Gorai.007G242000 I 0.708
GLYMA13G02170 Glycine max GLYMA13G02170 I 0.708
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.708
fgenesh1_pg.scaffold_163000049 Physcomitrella patens fgenesh1_pg.scaffold_163000049 I 0.708
GLYMA04G04641 Glycine max GLYMA04G04641 I 0.708
H311_00382 Anncaliia algerae H311_00382 I 0.704