CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10006500m.g
(
Citrus clementina
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Ciclev10006500m.g
T257858_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10006500m
MADS box
16
63
KIENEDDRMMTFSKHRSGIYKKASELVTLTGAEIGIVLFSLSGKPFTF
Links
Other
MADS box
family TFs
Other
Citrus clementina
TFs
26 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10006615m.g
Citrus clementina
Ciclev10006615m.g
N
0.938
Ciclev10007104m.g
Citrus clementina
Ciclev10007104m.g
N
0.896
Ciclev10006958m.g
Citrus clementina
Ciclev10006958m.g
N
0.875
Ciclev10006503m.g
Citrus clementina
Ciclev10006503m.g
N
0.875
Ciclev10006708m.g
Citrus clementina
Ciclev10006708m.g
N
0.833
Ciclev10007010m.g
Citrus clementina
Ciclev10007010m.g
N
0.812
Ciclev10006803m.g
Citrus clementina
Ciclev10006803m.g
N
0.792
Ciclev10006740m.g
Citrus clementina
Ciclev10006740m.g
N
0.792
orange1.1g044532m.g
Citrus sinensis
orange1.1g044532m.g
N
0.771
Ciclev10006957m.g
Citrus clementina
Ciclev10006957m.g
N
0.771
Ciclev10006530m.g
Citrus clementina
Ciclev10006530m.g
N
0.771
orange1.1g040485m.g
Citrus sinensis
orange1.1g040485m.g
N
0.750
Cla009921
Citrullus lanatus
Cla009921
N
0.750
29693.m002041
Ricinus communis
29693.m002041
N
0.750
POPTR_0001s25850
Populus trichocarpa
POPTR_0001s25850
N
0.750
Cucsa.047600
Cucumis sativus
Cucsa.047600
N
0.750
orange1.1g047467m.g
Citrus sinensis
orange1.1g047467m.g
N
0.729
Ciclev10007015m.g
Citrus clementina
Ciclev10007015m.g
N
0.729
Ciclev10006439m.g
Citrus clementina
Ciclev10006439m.g
N
0.729
cassava9826.m1
Manihot esculenta
cassava9826.m1
N
0.729
29693.m002042
Ricinus communis
29693.m002042
N
0.729
Ciclev10006427m.g
Citrus clementina
Ciclev10006427m.g
N
0.729
PRUPE_ppa024983mg
Prunus persica
PRUPE_ppa024983mg
N
0.708
Pm008734
Prunus mume
Pm008734
N
0.708
cassava39120.m1
Manihot esculenta
cassava39120.m1
N
0.708
POPTR_0004s13590
Populus trichocarpa
POPTR_0004s13590
N
0.708