CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10006708m.g
(
Citrus clementina
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Ciclev10006708m.g
T257868_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10006708m
MADS box
16
63
KIENENDRMIAFSKRRSGIYKKASELATLTGAEIGIVVFSPSGKPFSF
Links
Other
MADS box
family TFs
Other
Citrus clementina
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ciclev10007104m.g
Citrus clementina
Ciclev10007104m.g
N
0.938
Ciclev10007010m.g
Citrus clementina
Ciclev10007010m.g
N
0.938
Ciclev10006503m.g
Citrus clementina
Ciclev10006503m.g
N
0.917
Ciclev10006958m.g
Citrus clementina
Ciclev10006958m.g
N
0.917
POPTR_0001s25850
Populus trichocarpa
POPTR_0001s25850
N
0.833
Ciclev10006500m.g
Citrus clementina
Ciclev10006500m.g
N
0.833
Cucsa.047600
Cucumis sativus
Cucsa.047600
N
0.833
Cla009921
Citrullus lanatus
Cla009921
N
0.833
Ciclev10006615m.g
Citrus clementina
Ciclev10006615m.g
N
0.812
29693.m002042
Ricinus communis
29693.m002042
N
0.812
Ciclev10006530m.g
Citrus clementina
Ciclev10006530m.g
N
0.792
29693.m002041
Ricinus communis
29693.m002041
N
0.792
Ciclev10006559m.g
Citrus clementina
Ciclev10006559m.g
N
0.792
orange1.1g044532m.g
Citrus sinensis
orange1.1g044532m.g
N
0.792
PRUPE_ppa024983mg
Prunus persica
PRUPE_ppa024983mg
N
0.792
Ciclev10007090m.g
Citrus clementina
Ciclev10007090m.g
N
0.792
Ciclev10006803m.g
Citrus clementina
Ciclev10006803m.g
N
0.792
Pm008734
Prunus mume
Pm008734
N
0.792
Ciclev10006957m.g
Citrus clementina
Ciclev10006957m.g
N
0.792
Ciclev10006740m.g
Citrus clementina
Ciclev10006740m.g
N
0.792
cassava39120.m1
Manihot esculenta
cassava39120.m1
N
0.771
cassava9826.m1
Manihot esculenta
cassava9826.m1
N
0.771
Ciclev10006427m.g
Citrus clementina
Ciclev10006427m.g
N
0.756
Ciclev10006743m.g
Citrus clementina
Ciclev10006743m.g
N
0.750
PRUPE_ppa021886mg
Prunus persica
PRUPE_ppa021886mg
N
0.750
orange1.1g040485m.g
Citrus sinensis
orange1.1g040485m.g
N
0.750
Ciclev10006439m.g
Citrus clementina
Ciclev10006439m.g
N
0.750
POPTR_0004s13590
Populus trichocarpa
POPTR_0004s13590
N
0.750
Ciclev10006587m.g
Citrus clementina
Ciclev10006587m.g
N
0.733
MDP0000696333
Malus domestica
MDP0000696333
N
0.729
cassava9834.m1
Manihot esculenta
cassava9834.m1
N
0.729
Eucgr.E02870
Eucalyptus grandis
Eucgr.E02870
N
0.729
Ciclev10006546m.g
Citrus clementina
Ciclev10006546m.g
N
0.725
orange1.1g038327m.g
Citrus sinensis
orange1.1g038327m.g
N
0.722
Ciclev10006588m.g
Citrus clementina
Ciclev10006588m.g
N
0.721
cassava46357.m1
Manihot esculenta
cassava46357.m1
N
0.708
orange1.1g047467m.g
Citrus sinensis
orange1.1g047467m.g
N
0.708
POPTR_0009s05050
Populus trichocarpa
POPTR_0009s05050
N
0.708
Ciclev10007015m.g
Citrus clementina
Ciclev10007015m.g
N
0.708
Eucgr.E02872
Eucalyptus grandis
Eucgr.E02872
N
0.708
Eucgr.E02824
Eucalyptus grandis
Eucgr.E02824
N
0.708
Eucgr.E02827
Eucalyptus grandis
Eucgr.E02827
N
0.708
Eucgr.E02829
Eucalyptus grandis
Eucgr.E02829
N
0.708
Eucgr.L01236
Eucalyptus grandis
Eucgr.L01236
N
0.708