Ciclev10013728m.g (Citrus clementina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ciclev10013728m.g T257885_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10013728m MADS box 10 58

Links

Other MADS box family TFs
Other Citrus clementina TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.854
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.729
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.750
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.750
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.750
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.771
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.708
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.708
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.708
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.771
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.771
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.750
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.750
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.708
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.750
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.750
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.729
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.804
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.729
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.771
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.756
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.750
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.792
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.708
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.708
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.854
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.833
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.750
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.771
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.812
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.875
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.875
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.792
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.771
LjSGA_024860.1 Lotus japonicus LjSGA_024860.1 I 0.729
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.708
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.756
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.833
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.833
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.875
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.896
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.854
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.771
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.812
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.708
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.729
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.792
MDP0000846004 Malus domestica MDP0000846004 I 0.875
MDP0000925348 Malus domestica MDP0000925348 I 0.833
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.896
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.771
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.729
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.896
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.867
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.750
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.771
TCM_025670 Theobroma cacao TCM_025670 I 0.833
TCM_025671 Theobroma cacao TCM_025671 I 0.792
TCM_026845 Theobroma cacao TCM_026845 I 0.792
TCM_042799 Theobroma cacao TCM_042799 I 0.792
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.917
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.896
TCM_026842 Theobroma cacao TCM_026842 I 0.875
Bo2g104810 Brassica oleracea Bo2g104810 I 0.792
Bo9g078450 Brassica oleracea Bo9g078450 I 0.812
Bra018490 Brassica rapa Bra018490 I 0.812
Bra029469 Brassica rapa Bra029469 I 0.812
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.708
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.792
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.812
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.833
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.917
Ca_06495 Cicer arietinum Ca_06495 I 0.771
30199.m000879 Ricinus communis 30199.m000879 I 0.875
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.822
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.917
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.833
mgf026186m Mimulus guttatus mgf026186m I 0.729
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.729
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.875
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.729
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.854
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.854
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 1.000
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.896
30128.m008984 Ricinus communis 30128.m008984 I 0.854
Pm004396 Prunus mume Pm004396 I 0.867
Cla005226 Citrullus lanatus Cla005226 I 0.889
Pm003257 Prunus mume Pm003257 I 0.750
Cla009163 Citrullus lanatus Cla009163 I 0.792
Ca_13275 Cicer arietinum Ca_13275 I 0.833
TCM_025676 Theobroma cacao TCM_025676 N 0.729
MTR_4g028720 Medicago truncatula MTR_4g028720 N 0.708
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.729
Ca_08369 Cicer arietinum Ca_08369 N 0.708
TCM_042848 Theobroma cacao TCM_042848 N 0.729
LjT04G17.30.nc Lotus japonicus LjT04G17.30.nc N 0.729
AGL87 Populus trichocarpa POPTR_0013s11210 N 0.708
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.708
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.750
MTR_1g090783 Medicago truncatula MTR_1g090783 N 0.729
SapurV1A.0690s0130 Salix purpurea SapurV1A.0690s0130 N 0.708
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.750
TCM_021050 Theobroma cacao TCM_021050 N 0.708
MTR_5g047580 Medicago truncatula MTR_5g047580 N 0.708
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.708
GLYMA10G28320 Glycine max GLYMA10G28320 N 0.729