CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10018138m.g
(
Citrus clementina
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Ciclev10018138m.g
T257891_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10018138m
MADS box
39
86
RIENNSSRKVAFSKRRKGMFKKASELCRLCDAEIAIIVFSPKGRLYSF
Links
Other
MADS box
family TFs
Other
Citrus clementina
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g048296m.g
Citrus sinensis
orange1.1g048296m.g
N
0.979
mgf001038m
Mimulus guttatus
mgf001038m
I
0.750
Bra013891
Brassica rapa
Bra013891
I
0.729
Bo1g040180
Brassica oleracea
Bo1g040180
I
0.729
MDP0000144597
Malus domestica
MDP0000144597
I
0.729
OPUNC08G19670
Oryza punctata
OPUNC08G19670
I
0.729
MADS56
Oryza sativa
OS10G0536100
I
0.708
ORGLA10G0119200
Oryza glaberrima
ORGLA10G0119200
I
0.708
PGSC0003DMG400022748
Solanum tuberosum
PGSC0003DMG400022748
I
0.708
ORUFI10G17990
Oryza rufipogon
ORUFI10G17990
I
0.708
mgf005831m
Mimulus guttatus
mgf005831m
I
0.708
gene13354-v1.0-hybrid
Fragaria vesca
gene13354-v1.0-hybrid
I
0.708
Bostr.7867s0353
Boechera stricta
Bostr.7867s0353
I
0.708
Cucsa.251140
Cucumis sativus
Cucsa.251140
I
0.708
Solyc08g080100.2
Solanum lycopersicum
Solyc08g080100.2
I
0.708
ONIVA10G18680
Oryza nivara
ONIVA10G18680
I
0.708
LPERR10G12950
Leersia perrieri
LPERR10G12950
I
0.708
MTR_8g033220
Medicago truncatula
MTR_8g033220
I
0.708
Bo7g110310
Brassica oleracea
Bo7g110310
I
0.708
MADS56
Oryza indica
BGIOSGA033356
I
0.708
Al_scaffold_0002_1221
Arabidopsis lyrata
Al_scaffold_0002_1221
N
0.708
OB10G24040
Oryza brachyantha
OB10G24040
I
0.708
OBART10G16960
Oryza barthii
OBART10G16960
I
0.708
Al_scaffold_0001_74
Arabidopsis lyrata
Al_scaffold_0001_74
N
0.708
OMERI10G13430
Oryza meridionalis
OMERI10G13430
I
0.708
OLONG_017665
Oryza longistaminata
OLONG_017665
I
0.708
OGLUM10G16960
Oryza glumaepatula
OGLUM10G16960
I
0.708
OPUNC08G18260
Oryza punctata
OPUNC08G18260
I
0.708