CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10020575m.g
(
Citrus clementina
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Ciclev10020575m.g
T257892_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.896
0.896
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10020575m
MADS box
10
57
RLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLF
Ciclev10020780m
MADS box
10
57
RLESTSNRQVTYSKRRNGILKKARELSILCDIDIVLLMFSPTGRSTLF
Links
Other
MADS box
family TFs
Other
Citrus clementina
TFs
119 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
1.000
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.938
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.938
TCM_014051
Theobroma cacao
TCM_014051
I
0.917
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.917
30138.m004061
Ricinus communis
30138.m004061
I
0.917
AGL65
Arabidopsis thaliana
AT1G18750
D
0.896
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.896
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.896
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.875
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.875
gene26028-v1.0-hybrid
Fragaria vesca
gene26028-v1.0-hybrid
I
0.854
Bra031049
Brassica rapa
Bra031049
I
0.854
Bra016544
Brassica rapa
Bra016544
I
0.854
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.854
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.854
MDP0000193129
Malus domestica
MDP0000193129
I
0.854
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.854
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.854
PK21701.1
Cannabis sativa
PK21701.1
I
0.854
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.854
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.833
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.833
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.833
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.833
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.833
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.812
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.812
Bra025685
Brassica rapa
Bra025685
I
0.812
Pm024895
Prunus mume
Pm024895
I
0.812
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.804
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.804
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.804
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.804
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.804
F775_13266
Aegilops tauschii
F775_13266
I
0.804
Cla018884
Citrullus lanatus
Cla018884
I
0.792
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.792
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.792
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.792
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.792
Solyc03g115910.1
Solanum lycopersicum
Solyc03g115910.1
I
0.771
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.750
mgf000945m
Mimulus guttatus
mgf000945m
I
0.750
Cagra.0096s0037
Capsella grandiflora
Cagra.0096s0037
I
0.750
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.750
AGL66
Arabidopsis thaliana
AT1G77980
I
0.750
Carubv10021590m.g
Capsella rubella
Carubv10021590m.g
I
0.750
AGL66
Arabidopsis lyrata
fgenesh2_kg.2__2091__AT1G77980.1
I
0.750
mgf004425m
Mimulus guttatus
mgf004425m
I
0.750
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.750
AGL30
Arabidopsis thaliana
AT2G03060
I
0.739
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.739
Bra016386
Brassica rapa
Bra016386
I
0.729
Bra015643
Brassica rapa
Bra015643
I
0.729
Bra012308
Brassica rapa
Bra012308
I
0.729
OB08G26170
Oryza brachyantha
OB08G26170
I
0.729
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.729
Bostr.20129s0232
Boechera stricta
Bostr.20129s0232
I
0.729
Bo8g071330
Brassica oleracea
Bo8g071330
I
0.729
Bo7g060150
Brassica oleracea
Bo7g060150
I
0.729
Thhalv10019686m.g
Eutrema salsugineum
Thhalv10019686m.g
I
0.729
AGL104
Arabidopsis thaliana
AT1G22130
I
0.729
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.729
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.729
Bo6g121640
Brassica oleracea
Bo6g121640
I
0.729
MDP0000147667
Malus domestica
MDP0000147667
I
0.729
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.729
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.729
MTR_4g084740
Medicago truncatula
MTR_4g084740
I
0.729
Cla010361
Citrullus lanatus
Cla010361
I
0.729
Pm019181
Prunus mume
Pm019181
I
0.729
29908.m005982
Ricinus communis
29908.m005982
I
0.729
AGL104
Arabidopsis lyrata
Al_scaffold_0001_2320
I
0.729
PRUPE_ppa007816mg
Prunus persica
PRUPE_ppa007816mg
I
0.729
LjSGA_031058.2
Lotus japonicus
LjSGA_031058.2
I
0.717
Thhalv10004409m.g
Eutrema salsugineum
Thhalv10004409m.g
I
0.717
MDP0000773068
Malus domestica
MDP0000773068
I
0.708
MDP0000243965
Malus domestica
MDP0000243965
I
0.708
MDP0000919323
Malus domestica
MDP0000919323
I
0.708
MDP0000146415
Malus domestica
MDP0000146415
I
0.708
MDP0000146231
Malus domestica
MDP0000146231
I
0.708
TCM_034970
Theobroma cacao
TCM_034970
I
0.708
BGIOSGA003731
Oryza indica
BGIOSGA003731
I
0.708
Pavir.Fb01739
Panicum virgatum
Pavir.Fb01739
I
0.708
OLONG_004474
Oryza longistaminata
OLONG_004474
I
0.708
OGLUM08G20110
Oryza glumaepatula
OGLUM08G20110
I
0.708
OGLUM06G08350
Oryza glumaepatula
OGLUM06G08350
I
0.708
AGL30
Arabidopsis lyrata
Al_scaffold_0005_228
I
0.708
Si013985m.g
Setaria italica
Si013985m.g
I
0.708
PRUPE_ppa017562mg
Prunus persica
PRUPE_ppa017562mg
I
0.708
BGIOSGA026745
Oryza indica
BGIOSGA026745
I
0.708
OBART06G07860
Oryza barthii
OBART06G07860
I
0.708
TCM_001182
Theobroma cacao
TCM_001182
I
0.708
ONIVA06G09080
Oryza nivara
ONIVA06G09080
I
0.708
orange1.1g039560m.g
Citrus sinensis
orange1.1g039560m.g
I
0.708
Gorai.005G093000
Gossypium raimondii
Gorai.005G093000
I
0.708
Aquca_014_00554
Aquilegia coerulea
Aquca_014_00554
I
0.708
Bostr.12659s0064
Boechera stricta
Bostr.12659s0064
I
0.708
Pm006479
Prunus mume
Pm006479
I
0.708
ORUFI06G08110
Oryza rufipogon
ORUFI06G08110
I
0.708
OBART08G19110
Oryza barthii
OBART08G19110
I
0.708
ORUFI08G21330
Oryza rufipogon
ORUFI08G21330
I
0.708
GSMUA_Achr9G13010_001
Musa acuminata
GSMUA_Achr9G13010_001
I
0.708
OS08G0494100
Oryza sativa
OS08G0494100
I
0.708
OS06G0223300
Oryza sativa
OS06G0223300
I
0.708
LPERR08G16000
Leersia perrieri
LPERR08G16000
I
0.708
ORGLA08G0167200
Oryza glaberrima
ORGLA08G0167200
I
0.708
Cla014721
Citrullus lanatus
Cla014721
I
0.708
LPERR06G07270
Leersia perrieri
LPERR06G07270
I
0.708
gene31290-v1.0-hybrid
Fragaria vesca
gene31290-v1.0-hybrid
I
0.708
Ciclev10003964m.g
Citrus clementina
Ciclev10003964m.g
I
0.708
OPUNC06G07570
Oryza punctata
OPUNC06G07570
I
0.708
ORGLA06G0074200
Oryza glaberrima
ORGLA06G0074200
I
0.708
Cagra.1707s0007
Capsella grandiflora
Cagra.1707s0007
I
0.708
PGSC0003DMG400019525
Solanum tuberosum
PGSC0003DMG400019525
N
0.708
Carubv10010907m.g
Capsella rubella
Carubv10010907m.g
I
0.708
GSMUA_Achr2G01740_001
Musa acuminata
GSMUA_Achr2G01740_001
I
0.702