Ciclev10020575m.g (Citrus clementina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ciclev10020575m.g T257892_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.896 0.896
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10020575m MADS box 10 57
Ciclev10020780m MADS box 10 57

Links

Other MADS box family TFs
Other Citrus clementina TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 1.000
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.938
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.938
TCM_014051 Theobroma cacao TCM_014051 I 0.917
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.917
30138.m004061 Ricinus communis 30138.m004061 I 0.917
AGL65 Arabidopsis thaliana AT1G18750 D 0.896
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.896
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.896
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.875
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.875
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.854
Bra031049 Brassica rapa Bra031049 I 0.854
Bra016544 Brassica rapa Bra016544 I 0.854
Bo8g068060 Brassica oleracea Bo8g068060 I 0.854
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.854
MDP0000193129 Malus domestica MDP0000193129 I 0.854
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.854
Bo8g104060 Brassica oleracea Bo8g104060 I 0.854
PK21701.1 Cannabis sativa PK21701.1 I 0.854
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.854
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.833
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.833
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.833
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.833
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.833
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.812
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.812
Bra025685 Brassica rapa Bra025685 I 0.812
Pm024895 Prunus mume Pm024895 I 0.812
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.804
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.804
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.804
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.804
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.804
F775_13266 Aegilops tauschii F775_13266 I 0.804
Cla018884 Citrullus lanatus Cla018884 I 0.792
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.792
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.792
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.792
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.792
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.771
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.750
mgf000945m Mimulus guttatus mgf000945m I 0.750
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.750
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.750
AGL66 Arabidopsis thaliana AT1G77980 I 0.750
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.750
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.750
mgf004425m Mimulus guttatus mgf004425m I 0.750
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.750
AGL30 Arabidopsis thaliana AT2G03060 I 0.739
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.739
Bra016386 Brassica rapa Bra016386 I 0.729
Bra015643 Brassica rapa Bra015643 I 0.729
Bra012308 Brassica rapa Bra012308 I 0.729
OB08G26170 Oryza brachyantha OB08G26170 I 0.729
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.729
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.729
Bo8g071330 Brassica oleracea Bo8g071330 I 0.729
Bo7g060150 Brassica oleracea Bo7g060150 I 0.729
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.729
AGL104 Arabidopsis thaliana AT1G22130 I 0.729
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.729
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.729
Bo6g121640 Brassica oleracea Bo6g121640 I 0.729
MDP0000147667 Malus domestica MDP0000147667 I 0.729
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.729
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.729
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.729
Cla010361 Citrullus lanatus Cla010361 I 0.729
Pm019181 Prunus mume Pm019181 I 0.729
29908.m005982 Ricinus communis 29908.m005982 I 0.729
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.729
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.729
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.717
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.717
MDP0000773068 Malus domestica MDP0000773068 I 0.708
MDP0000243965 Malus domestica MDP0000243965 I 0.708
MDP0000919323 Malus domestica MDP0000919323 I 0.708
MDP0000146415 Malus domestica MDP0000146415 I 0.708
MDP0000146231 Malus domestica MDP0000146231 I 0.708
TCM_034970 Theobroma cacao TCM_034970 I 0.708
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.708
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.708
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.708
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.708
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.708
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.708
Si013985m.g Setaria italica Si013985m.g I 0.708
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.708
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.708
OBART06G07860 Oryza barthii OBART06G07860 I 0.708
TCM_001182 Theobroma cacao TCM_001182 I 0.708
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.708
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.708
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.708
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.708
Bostr.12659s0064 Boechera stricta Bostr.12659s0064 I 0.708
Pm006479 Prunus mume Pm006479 I 0.708
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.708
OBART08G19110 Oryza barthii OBART08G19110 I 0.708
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.708
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.708
OS08G0494100 Oryza sativa OS08G0494100 I 0.708
OS06G0223300 Oryza sativa OS06G0223300 I 0.708
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.708
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.708
Cla014721 Citrullus lanatus Cla014721 I 0.708
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.708
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.708
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.708
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.708
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.708
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.708
PGSC0003DMG400019525 Solanum tuberosum PGSC0003DMG400019525 N 0.708
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.708
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.702