Ciclev10030387m.g (Citrus clementina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ciclev10030387m.g T257913_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10030387m MADS box 17 64

Links

Other MADS box family TFs
Other Citrus clementina TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 1.000
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.917
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.917
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.875
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.854
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.854
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.854
MDP0000168914 Malus domestica MDP0000168914 N 0.833
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.833
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.833
30099.m001671 Ricinus communis 30099.m001671 N 0.833
TCM_040735 Theobroma cacao TCM_040735 N 0.833
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.833
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.833
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.833
Ca_07607 Cicer arietinum Ca_07607 N 0.833
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.833
Ca_26354 Cicer arietinum Ca_26354 N 0.833
29613.m000367 Ricinus communis 29613.m000367 N 0.833
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.812
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.812
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.812
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.812
mgf024307m Mimulus guttatus mgf024307m N 0.812
mgf018529m Mimulus guttatus mgf018529m N 0.812
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.812
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.812
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.792
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.792
Pm021070 Prunus mume Pm021070 N 0.792
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.792
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.792
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.771
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.771
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.771
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.771
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.771
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.771
TCM_006324 Theobroma cacao TCM_006324 N 0.771
AGL61 Arabidopsis thaliana AT2G24840 N 0.750
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.750
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.750
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.750
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.750
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.750
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.750
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.750
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.750
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.750
30099.m001672 Ricinus communis 30099.m001672 N 0.750
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.750
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.750
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.729
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.729
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.729
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.729
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.729
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.729
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.729
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.729
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.729
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.729
Lus10030663.g Linum usitatissimum Lus10030663.g N 0.729
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.729
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.729
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.729
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.729
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.729
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.729
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.729
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.729
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.729
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.729
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.729
mgf021403m Mimulus guttatus mgf021403m N 0.729
mgf024490m Mimulus guttatus mgf024490m N 0.729
29838.m001672 Ricinus communis 29838.m001672 N 0.729
Pm016629 Prunus mume Pm016629 N 0.729
Bra007829 Brassica rapa Bra007829 N 0.729
Bo8g099550 Brassica oleracea Bo8g099550 N 0.729
Bra026764 Brassica rapa Bra026764 N 0.729
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.729
Cla006571 Citrullus lanatus Cla006571 N 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
mgf020533m Mimulus guttatus mgf020533m N 0.729
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.729
evm.TU.contig_33091.3 Carica papaya evm.TU.contig_33091.3 N 0.708
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.708
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.708
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.708
Pm021018 Prunus mume Pm021018 N 0.708
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.708
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.708
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.708
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.708
TCM_006323 Theobroma cacao TCM_006323 N 0.708
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.708
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.708
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.708
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.708
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.708
Bo5g113750 Brassica oleracea Bo5g113750 N 0.708
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.708
Bra032057 Brassica rapa Bra032057 N 0.708
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.708
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N 0.708
PGSC0003DMG400039595 Solanum tuberosum PGSC0003DMG400039595 N 0.708
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.708
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.708
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.708
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.708
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.708
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.708
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.708
mgf023207m Mimulus guttatus mgf023207m N 0.708
mgf025566m Mimulus guttatus mgf025566m N 0.708
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.708
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.708
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.708
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.708
mgf022403m Mimulus guttatus mgf022403m N 0.708
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.708
mgf018184m Mimulus guttatus mgf018184m N 0.708
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.708
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.708
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.708
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.708
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.708
mgf020939m Mimulus guttatus mgf020939m N 0.708
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.708
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.708
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.708