CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Eucgr.I02376
(
Eucalyptus grandis
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Eucgr.I02376
T257990_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.833
0.833
AP3
M10919_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.833
0.833
Q8VWZ4_MALDO
M11026_2.00
Malus domestica
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.792
0.792
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.771
0.771
MADS16
M10971_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Eucgr.I02376.1
MADS box
10
57
KIENDTNRQVTYSKRRNGIFKKAHELTVLCDARVSILMLSGNKKLHEY
Eucgr.I02376.2
MADS box
10
57
KIENDTNRQVTYSKRRNGIFKKAHELTVLCDARVSILMLSGNKKLHEY
Links
Other
MADS box
family TFs
Other
Eucalyptus grandis
TFs
98 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AP3
Vitis vinifera
VIT_18s0001g13460
I
0.833
Cagra.0562s0025
Capsella grandiflora
Cagra.0562s0025
I
0.833
Carubv10018833m.g
Capsella rubella
Carubv10018833m.g
I
0.833
mgf015533m
Mimulus guttatus
mgf015533m
I
0.833
AP3
Arabidopsis lyrata
fgenesh2_kg.5__1825__AT3G54340.1
I
0.833
Bostr.0697s0046
Boechera stricta
Bostr.0697s0046
I
0.833
AP3
Arabidopsis thaliana
AT3G54340
D
0.833
cassava37821.valid.m1
Manihot esculenta
cassava37821.valid.m1
I
0.812
cassava41235.m1
Manihot esculenta
cassava41235.m1
I
0.812
PRUPE_ppa010727mg
Prunus persica
PRUPE_ppa010727mg
I
0.812
cassava37822.valid.m1
Manihot esculenta
cassava37822.valid.m1
I
0.812
Bo4g120010
Brassica oleracea
Bo4g120010
I
0.812
Bra014822
Brassica rapa
Bra014822
I
0.812
Thhalv10010683m.g
Eutrema salsugineum
Thhalv10010683m.g
I
0.812
SapurV1A.2002s0050
Salix purpurea
SapurV1A.2002s0050
I
0.812
Bo8g083600
Brassica oleracea
Bo8g083600
I
0.812
Bra007067
Brassica rapa
Bra007067
I
0.812
Cucsa.342790
Cucumis sativus
Cucsa.342790
I
0.792
Solyc04g081000.2
Solanum lycopersicum
Solyc04g081000.2
I
0.792
Solyc02g084630.2
Solanum lycopersicum
Solyc02g084630.2
I
0.792
Ca_04909
Cicer arietinum
Ca_04909
I
0.792
Cla021117
Citrullus lanatus
Cla021117
I
0.792
MDP0000133037
Malus domestica
MDP0000133037
I
0.792
Q8VWZ4_MALDO
Malus domestica
Q8VWZ4_MALDO
D
0.792
SapurV1A.0569s0080
Salix purpurea
SapurV1A.0569s0080
I
0.792
chr1.CM0195.210.nc
Lotus japonicus
chr1.CM0195.210.nc
I
0.792
chr2.CM0249.370.nd
Lotus japonicus
chr2.CM0249.370.nd
I
0.792
MDP0000315938
Malus domestica
MDP0000315938
I
0.792
MDP0000224779
Malus domestica
MDP0000224779
I
0.792
Gorai.009G271100
Gossypium raimondii
Gorai.009G271100
I
0.792
POPTR_0007s13660
Populus trichocarpa
POPTR_0007s13660
I
0.792
MDP0000184294
Malus domestica
MDP0000184294
I
0.792
Eucgr.F01615
Eucalyptus grandis
Eucgr.F01615
I
0.792
Ca_01994
Cicer arietinum
Ca_01994
I
0.792
MTR_3g113030
Medicago truncatula
MTR_3g113030
I
0.792
POPTR_0005s12000
Populus trichocarpa
POPTR_0005s12000
I
0.792
GLYMA11G07820
Glycine max
GLYMA11G07820
I
0.792
GLYMA06G02990
Glycine max
GLYMA06G02990
I
0.792
GLYMA01G37470
Glycine max
GLYMA01G37470
I
0.792
PGSC0003DMG400003541
Solanum tuberosum
PGSC0003DMG400003541
I
0.792
MTR_5g021270
Medicago truncatula
MTR_5g021270
I
0.792
PGSC0003DMG400003709
Solanum tuberosum
PGSC0003DMG400003709
I
0.792
evm.TU.supercontig_6.202
Carica papaya
evm.TU.supercontig_6.202
I
0.771
gene14896-v1.0-hybrid
Fragaria vesca
gene14896-v1.0-hybrid
I
0.771
evm.TU.supercontig_6.199
Carica papaya
evm.TU.supercontig_6.199
I
0.771
AP3
Populus trichocarpa
POPTR_0002s02990
I
0.771
TCM_034148
Theobroma cacao
TCM_034148
I
0.771
Lus10010630.g
Linum usitatissimum
Lus10010630.g
I
0.771
Lus10031960.g
Linum usitatissimum
Lus10031960.g
I
0.771
GLYMA04G02980
Glycine max
GLYMA04G02980
I
0.771
PRUPE_ppa026083mg
Prunus persica
PRUPE_ppa026083mg
I
0.771
SapurV1A.0396s0210
Salix purpurea
SapurV1A.0396s0210
I
0.771
orange1.1g027470m.g
Citrus sinensis
orange1.1g027470m.g
I
0.771
Lus10033187.g
Linum usitatissimum
Lus10033187.g
I
0.771
mgf000046m
Mimulus guttatus
mgf000046m
I
0.771
Ciclev10026433m.g
Citrus clementina
Ciclev10026433m.g
I
0.771
Pm026712
Prunus mume
Pm026712
I
0.771
Pm006266
Prunus mume
Pm006266
I
0.771
TCM_000266
Theobroma cacao
TCM_000266
I
0.771
VIT_04s0023g02820
Vitis vinifera
VIT_04s0023g02820
I
0.771
29782.m000119
Ricinus communis
29782.m000119
I
0.771
Q40513_TOBAC
Nicotiana tabacum
Q40513_TOBAC
D
0.771
Gorai.003G011500
Gossypium raimondii
Gorai.003G011500
I
0.750
GSMUA_Achr9G20950_001
Musa acuminata
GSMUA_Achr9G20950_001
I
0.750
Aquca_006_00072
Aquilegia coerulea
Aquca_006_00072
I
0.750
Gorai.008G064900
Gossypium raimondii
Gorai.008G064900
I
0.750
cassava21176.m1
Manihot esculenta
cassava21176.m1
I
0.750
cassava33649.m1
Manihot esculenta
cassava33649.m1
I
0.750
GSMUA_Achr9G20940_001
Musa acuminata
GSMUA_Achr9G20940_001
I
0.750
orange1.1g040046m.g
Citrus sinensis
orange1.1g040046m.g
I
0.729
orange1.1g024093m.g
Citrus sinensis
orange1.1g024093m.g
I
0.729
SapurV1A.0025s0830
Salix purpurea
SapurV1A.0025s0830
I
0.729
Ciclev10002410m.g
Citrus clementina
Ciclev10002410m.g
I
0.729
Ciclev10009338m.g
Citrus clementina
Ciclev10009338m.g
I
0.729
AMTR_s00066p00109320
Amborella trichopoda
AMTR_s00066p00109320
I
0.708
BGIOSGA020546
Oryza indica
BGIOSGA020546
I
0.708
Pavir.Db00185
Panicum virgatum
Pavir.Db00185
I
0.708
BRADI1G35000
Brachypodium distachyon
BRADI1G35000
I
0.708
Traes_7DL_DDCC09B24
Triticum aestivum
Traes_7DL_DDCC09B24
I
0.708
TRIUR3_29719
Triticum urartu
TRIUR3_29719
I
0.708
Traes_7AL_1C76E543C
Triticum aestivum
Traes_7AL_1C76E543C
I
0.708
Sb10g029810
Sorghum bicolor
Sb10g029810
I
0.708
Pavir.J11672
Panicum virgatum
Pavir.J11672
I
0.708
LPERR06G22780
Leersia perrieri
LPERR06G22780
I
0.708
OGLUM06G28660
Oryza glumaepatula
OGLUM06G28660
I
0.708
OBART06G27230
Oryza barthii
OBART06G27230
I
0.708
OLONG_004226
Oryza longistaminata
OLONG_004226
I
0.708
OMERI06G27290
Oryza meridionalis
OMERI06G27290
I
0.708
ONIVA06G29820
Oryza nivara
ONIVA06G29820
I
0.708
OB06G35020
Oryza brachyantha
OB06G35020
I
0.708
MLOC_31575
Hordeum vulgare
MLOC_31575
I
0.708
AMTR_s00001p00217560
Amborella trichopoda
AMTR_s00001p00217560
I
0.708
GRMZM2G139073
Zea mays
GRMZM2G139073
I
0.708
MADS16
Oryza sativa
OS06G0712700
D
0.708
ORGLA06G0229200
Oryza glaberrima
ORGLA06G0229200
I
0.708
ORUFI06G29170
Oryza rufipogon
ORUFI06G29170
I
0.708
Si007221m.g
Setaria italica
Si007221m.g
I
0.708