Eucgr.I02376 (Eucalyptus grandis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Eucgr.I02376 T257990_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA

TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.833 0.833
AP3
M10919_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.833 0.833
Q8VWZ4_MALDO
M11026_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.792 0.792
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.771 0.771
MADS16
M10971_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.I02376.1 MADS box 10 57
Eucgr.I02376.2 MADS box 10 57

Links

Other MADS box family TFs
Other Eucalyptus grandis TFs

98 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29782.m000119 Ricinus communis 29782.m000119 I 0.771
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.708
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.708
AP3 Populus trichocarpa POPTR_0002s02990 I 0.771
AP3 Vitis vinifera VIT_18s0001g13460 I 0.833
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.833
AP3 Arabidopsis thaliana AT3G54340 D 0.833
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.750
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.708
Bo4g120010 Brassica oleracea Bo4g120010 I 0.812
Bo8g083600 Brassica oleracea Bo8g083600 I 0.812
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.833
Bra007067 Brassica rapa Bra007067 I 0.812
Bra014822 Brassica rapa Bra014822 I 0.812
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.708
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.833
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.833
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.750
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.750
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.812
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.812
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.812
Ca_01994 Cicer arietinum Ca_01994 I 0.792
Ca_04909 Cicer arietinum Ca_04909 I 0.792
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.792
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.792
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.729
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.729
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.771
Cla021117 Citrullus lanatus Cla021117 I 0.792
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.792
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.792
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.771
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.771
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.771
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.792
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.771
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.792
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.792
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.750
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.750
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.792
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.708
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.750
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.750
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.708
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.771
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.771
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.771
MADS16 Oryza sativa OS06G0712700 D 0.708
MDP0000133037 Malus domestica MDP0000133037 I 0.792
MDP0000184294 Malus domestica MDP0000184294 I 0.792
MDP0000224779 Malus domestica MDP0000224779 I 0.792
MDP0000315938 Malus domestica MDP0000315938 I 0.792
mgf000046m Mimulus guttatus mgf000046m I 0.771
mgf015533m Mimulus guttatus mgf015533m I 0.833
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.708
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.792
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.792
OB06G35020 Oryza brachyantha OB06G35020 I 0.708
OBART06G27230 Oryza barthii OBART06G27230 I 0.708
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.708
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.708
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.708
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.708
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.729
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.771
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.729
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.708
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.708
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.708
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.708
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.792
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.792
Pm006266 Prunus mume Pm006266 I 0.771
Pm026712 Prunus mume Pm026712 I 0.771
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.792
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.792
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.812
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.771
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.771
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.792
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.729
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.771
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.792
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.812
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.708
Si007221m.g Setaria italica Si007221m.g I 0.708
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.792
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.792
TCM_000266 Theobroma cacao TCM_000266 I 0.771
TCM_034148 Theobroma cacao TCM_034148 I 0.771
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.812
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.708
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.708
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.708
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.771