Eucgr.K00201 (Eucalyptus grandis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Eucgr.K00201 T258008_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9ATE7_PETHY
M11010_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP22_01
0.750 0.750
AGL42
M06995_2.00
Arabidopsis thaliana
RATGATG

CATCATY
Dap-seq
OMalley et al.(2016)
AGL42_col_a
0.708 0.708
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND

HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.708 0.708
SOC1
M10915_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.708 0.708
MADS5
M10970_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_02
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.K00201.1 MADS box 10 57
Eucgr.K00201.2 MADS box 10 57
Eucgr.K00201.3 MADS box 10 57
Eucgr.K00201.4 MADS box 10 57
Eucgr.K00201.5 MADS box 10 57
Eucgr.K00201.6 MADS box 10 57

Links

Other MADS box family TFs
Other Eucalyptus grandis TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Eucgr.K00193 Eucalyptus grandis Eucgr.K00193 I 0.958
Eucgr.K00190 Eucalyptus grandis Eucgr.K00190 I 0.854
Eucgr.K00194 Eucalyptus grandis Eucgr.K00194 I 0.833
Eucgr.K00200 Eucalyptus grandis Eucgr.K00200 I 0.833
Eucgr.K00208 Eucalyptus grandis Eucgr.K00208 I 0.833
Eucgr.K00192 Eucalyptus grandis Eucgr.K00192 I 0.833
VIT_16s0022g02400 Vitis vinifera VIT_16s0022g02400 I 0.812
Eucgr.K00204 Eucalyptus grandis Eucgr.K00204 I 0.812
30147.m014133 Ricinus communis 30147.m014133 I 0.812
Cla006326 Citrullus lanatus Cla006326 I 0.812
Eucgr.K00203 Eucalyptus grandis Eucgr.K00203 I 0.812
evm.TU.supercontig_4.204 Carica papaya evm.TU.supercontig_4.204 I 0.792
Cla002388 Citrullus lanatus Cla002388 I 0.792
gene13354-v1.0-hybrid Fragaria vesca gene13354-v1.0-hybrid I 0.792
Cucsa.115490 Cucumis sativus Cucsa.115490 I 0.792
Eucgr.K00191 Eucalyptus grandis Eucgr.K00191 I 0.792
Eucgr.K00202 Eucalyptus grandis Eucgr.K00202 I 0.792
Eucgr.K00197 Eucalyptus grandis Eucgr.K00197 I 0.792
cassava21331.m1 Manihot esculenta cassava21331.m1 I 0.771
Eucgr.K00207 Eucalyptus grandis Eucgr.K00207 I 0.771
Eucgr.K00199 Eucalyptus grandis Eucgr.K00199 I 0.771
Ciclev10006654m.g Citrus clementina Ciclev10006654m.g I 0.771
orange1.1g033826m.g Citrus sinensis orange1.1g033826m.g I 0.771
Cucsa.251140 Cucumis sativus Cucsa.251140 I 0.771
TCM_015049 Theobroma cacao TCM_015049 I 0.771
PRUPE_ppa019267mg Prunus persica PRUPE_ppa019267mg I 0.771
Pm019404 Prunus mume Pm019404 I 0.771
MDP0000144597 Malus domestica MDP0000144597 I 0.771
MDP0000060753 Malus domestica MDP0000060753 I 0.771
MDP0000462145 Malus domestica MDP0000462145 I 0.750
cassava35068.m1 Manihot esculenta cassava35068.m1 I 0.750
PGSC0003DMG401024252 Solanum tuberosum PGSC0003DMG401024252 I 0.750
Gorai.007G009800 Gossypium raimondii Gorai.007G009800 I 0.750
GLYMA10G38541 Glycine max GLYMA10G38541 I 0.750
Solyc12g056460.1 Solanum lycopersicum Solyc12g056460.1 I 0.750
MDP0000200272 Malus domestica MDP0000200272 I 0.750
Thhalv10004954m.g Eutrema salsugineum Thhalv10004954m.g I 0.750
Q9ATE7_PETHY Petunia x hybrida Q9ATE7_PETHY D 0.750
Solyc03g006830.2 Solanum lycopersicum Solyc03g006830.2 I 0.750
Bo00946s010 Brassica oleracea Bo00946s010 I 0.750
SapurV1A.0400s0250 Salix purpurea SapurV1A.0400s0250 I 0.729
Carubv10027529m.g Capsella rubella Carubv10027529m.g I 0.729
Cagra.4003s0006 Capsella grandiflora Cagra.4003s0006 I 0.729
Cagra.0277s0030 Capsella grandiflora Cagra.0277s0030 I 0.729
PGSC0003DMG400025279 Solanum tuberosum PGSC0003DMG400025279 I 0.729
Bostr.15774s0333 Boechera stricta Bostr.15774s0333 I 0.729
Aquca_013_00471 Aquilegia coerulea Aquca_013_00471 I 0.729
Eucgr.A02846 Eucalyptus grandis Eucgr.A02846 I 0.729
Ciclev10022568m.g Citrus clementina Ciclev10022568m.g I 0.729
Carubv10027142m.g Capsella rubella Carubv10027142m.g I 0.729
orange1.1g027691m.g Citrus sinensis orange1.1g027691m.g I 0.729
Bo7g110310 Brassica oleracea Bo7g110310 I 0.729
Lus10014143.g Linum usitatissimum Lus10014143.g I 0.729
Gorai.005G221300 Gossypium raimondii Gorai.005G221300 I 0.729
GLYMA20G29300 Glycine max GLYMA20G29300 I 0.729
Bo4g195720 Brassica oleracea Bo4g195720 I 0.729
GLYMA17G14191 Glycine max GLYMA17G14191 I 0.729
evm.TU.supercontig_18.166 Carica papaya evm.TU.supercontig_18.166 I 0.729
Bra029155 Brassica rapa Bra029155 I 0.729
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.729
Bra028282 Brassica rapa Bra028282 I 0.729
Bo9g103660 Brassica oleracea Bo9g103660 I 0.729
GLYMA05G03660 Glycine max GLYMA05G03660 I 0.729
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I 0.727
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
PK09312.1 Cannabis sativa PK09312.1 I 0.708
Bostr.25993s0208 Boechera stricta Bostr.25993s0208 I 0.708
chr4.CM0126.630.nc Lotus japonicus chr4.CM0126.630.nc I 0.708
Bostr.25463s0138 Boechera stricta Bostr.25463s0138 I 0.708
chr1.CM0163.120.nc Lotus japonicus chr1.CM0163.120.nc I 0.708
cassava30125.valid.m1 Manihot esculenta cassava30125.valid.m1 I 0.708
Bostr.26833s0022 Boechera stricta Bostr.26833s0022 I 0.708
Thhalv10026205m.g Eutrema salsugineum Thhalv10026205m.g I 0.708
cassava723.valid.m1 Manihot esculenta cassava723.valid.m1 I 0.708
Cucsa.302640 Cucumis sativus Cucsa.302640 I 0.708
mgf001038m Mimulus guttatus mgf001038m I 0.708
Thhalv10028949m.g Eutrema salsugineum Thhalv10028949m.g I 0.708
mgf005831m Mimulus guttatus mgf005831m I 0.708
mgf007062m Mimulus guttatus mgf007062m I 0.708
Eucgr.C01942 Eucalyptus grandis Eucgr.C01942 I 0.708
Gorai.008G115200 Gossypium raimondii Gorai.008G115200 I 0.708
Lus10005325.g Linum usitatissimum Lus10005325.g I 0.708
Gorai.004G132000 Gossypium raimondii Gorai.004G132000 I 0.708
orange1.1g028363m.g Citrus sinensis orange1.1g028363m.g I 0.708
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.708
SapurV1A.0024s0570 Salix purpurea SapurV1A.0024s0570 I 0.708
Lus10006715.g Linum usitatissimum Lus10006715.g I 0.708
Lus10006716.g Linum usitatissimum Lus10006716.g I 0.708
Lus10039580.g Linum usitatissimum Lus10039580.g I 0.708
MDP0000314765 Malus domestica MDP0000314765 I 0.708
Lus10031665.g Linum usitatissimum Lus10031665.g I 0.708
Lus10027404.g Linum usitatissimum Lus10027404.g I 0.708
Lus10014144.g Linum usitatissimum Lus10014144.g I 0.708
Pm018089 Prunus mume Pm018089 I 0.708
Thhalv10001632m.g Eutrema salsugineum Thhalv10001632m.g I 0.708
Cagra.7242s0001 Capsella grandiflora Cagra.7242s0001 I 0.708
Carubv10001906m.g Capsella rubella Carubv10001906m.g I 0.708
Cagra.2248s0020 Capsella grandiflora Cagra.2248s0020 I 0.708
Cagra.0542s0040 Capsella grandiflora Cagra.0542s0040 I 0.708
Cagra.0050s0134 Capsella grandiflora Cagra.0050s0134 I 0.708
Carubv10024046m.g Capsella rubella Carubv10024046m.g I 0.708
Carubv10026982m.g Capsella rubella Carubv10026982m.g I 0.708
Eucgr.E00516 Eucalyptus grandis Eucgr.E00516 I 0.708
Thhalv10014716m.g Eutrema salsugineum Thhalv10014716m.g I 0.708
Eucgr.D02425 Eucalyptus grandis Eucgr.D02425 I 0.708
Eucgr.D01939 Eucalyptus grandis Eucgr.D01939 I 0.708
Ciclev10023160m.g Citrus clementina Ciclev10023160m.g I 0.708
Bostr.7867s0353 Boechera stricta Bostr.7867s0353 I 0.708
TCM_016147 Theobroma cacao TCM_016147 I 0.708
GLYMA09G40230 Glycine max GLYMA09G40230 I 0.708
GLYMA18G45780 Glycine max GLYMA18G45780 I 0.708
GSMUA_Achr2G04340_001 Musa acuminata GSMUA_Achr2G04340_001 I 0.708
GSMUA_Achr8G12280_001 Musa acuminata GSMUA_Achr8G12280_001 I 0.708
GLYMA08G12730 Glycine max GLYMA08G12730 I 0.708
GLYMA07G08831 Glycine max GLYMA07G08831 I 0.708
AGL14 Arabidopsis lyrata fgenesh2_kg.6__3138__AT4G11880.1 I 0.708
GLYMA03G02191 Glycine max GLYMA03G02191 I 0.708
GLYMA05G29595 Glycine max GLYMA05G29595 I 0.708
LPERR02G00370 Leersia perrieri LPERR02G00370 I 0.708
LPERR06G03790 Leersia perrieri LPERR06G03790 I 0.708
OB06G13870 Oryza brachyantha OB06G13870 I 0.708
OB10G24040 Oryza brachyantha OB10G24040 I 0.708
OB12G15620 Oryza brachyantha OB12G15620 I 0.708
OBART06G04180 Oryza barthii OBART06G04180 I 0.708
MTR_8g033220 Medicago truncatula MTR_8g033220 I 0.708
MTR_7g075870 Medicago truncatula MTR_7g075870 I 0.708
LPERR10G12950 Leersia perrieri LPERR10G12950 I 0.708
LPERR12G05240 Leersia perrieri LPERR12G05240 I 0.708
MLOC_57890 Hordeum vulgare MLOC_57890 I 0.708
F775_30822 Aegilops tauschii F775_30822 I 0.708
BRADI4G40350 Brachypodium distachyon BRADI4G40350 I 0.708
MADS56 Oryza indica BGIOSGA033356 I 0.708
Bo1g040180 Brassica oleracea Bo1g040180 I 0.708
Bo2g162920 Brassica oleracea Bo2g162920 I 0.708
Bo3g038880 Brassica oleracea Bo3g038880 I 0.708
MADS5 Oryza indica BGIOSGA021849 I 0.708
AGL42 Arabidopsis thaliana AT5G62165 D 0.708
SOC1 Arabidopsis thaliana AT2G45660 D 0.708
AGL14 Arabidopsis thaliana AT4G11880 I 0.708
AGL72 Arabidopsis thaliana AT5G51860 I 0.708
Bo6g076090 Brassica oleracea Bo6g076090 I 0.708
Bo7g098670 Brassica oleracea Bo7g098670 I 0.708
Bra035907 Brassica rapa Bra035907 I 0.708
Bra039324 Brassica rapa Bra039324 I 0.708
BRADI1G48520 Brachypodium distachyon BRADI1G48520 I 0.708
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I 0.708
Bra029281 Brassica rapa Bra029281 I 0.708
Bra013891 Brassica rapa Bra013891 I 0.708
Bo8g050720 Brassica oleracea Bo8g050720 I 0.708
Bra000393 Brassica rapa Bra000393 I 0.708
Bra003356 Brassica rapa Bra003356 I 0.708
OBART10G16960 Oryza barthii OBART10G16960 I 0.708
OBART12G05940 Oryza barthii OBART12G05940 I 0.708
PRUPE_ppa014428mg Prunus persica PRUPE_ppa014428mg I 0.708
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
Sb10g004390 Sorghum bicolor Sb10g004390 I 0.708
AGL20 Arabidopsis lyrata scaffold_403512.1 I 0.708
POPTR_0002s15310 Populus trichocarpa POPTR_0002s15310 I 0.708
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I 0.708
MADS56 Oryza sativa OS10G0536100 I 0.708
MADS13 Oryza sativa OS12G0207000 I 0.708
PGSC0003DMG400000008 Solanum tuberosum PGSC0003DMG400000008 I 0.708
scaffold_801621.1 Arabidopsis lyrata scaffold_801621.1 I 0.708
Si007226m.g Setaria italica Si007226m.g I 0.708
Traes_5AS_7BFB385EF Triticum aestivum Traes_5AS_7BFB385EF I 0.708
Traes_5DS_16243E52C Triticum aestivum Traes_5DS_16243E52C I 0.708
TRIUR3_28215 Triticum urartu TRIUR3_28215 I 0.708
Cla011687 Citrullus lanatus Cla011687 I 0.708
AMTR_s00001p00266470 Amborella trichopoda AMTR_s00001p00266470 I 0.708
TCM_005456 Theobroma cacao TCM_005456 I 0.708
Si019985m.g Setaria italica Si019985m.g I 0.708
Solyc06g035570.1 Solanum lycopersicum Solyc06g035570.1 I 0.708
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I 0.708
MADS5 Oryza sativa OS06G0162800 D 0.708
ORUFI12G06810 Oryza rufipogon ORUFI12G06810 I 0.708
OLONG_009999 Oryza longistaminata OLONG_009999 I 0.708
OLONG_017665 Oryza longistaminata OLONG_017665 I 0.708
OMERI06G04850 Oryza meridionalis OMERI06G04850 I 0.708
OMERI10G13430 Oryza meridionalis OMERI10G13430 I 0.708
OLONG_006914 Oryza longistaminata OLONG_006914 I 0.708
OLONG_005831 Oryza longistaminata OLONG_005831 I 0.708
OGLUM06G04290 Oryza glumaepatula OGLUM06G04290 I 0.708
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I 0.708
OGLUM12G07150 Oryza glumaepatula OGLUM12G07150 I 0.708
OMERI12G04040 Oryza meridionalis OMERI12G04040 I 0.708
ONIVA06G05400 Oryza nivara ONIVA06G05400 I 0.708
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I 0.708
ORGLA12G0056500 Oryza glaberrima ORGLA12G0056500 I 0.708
ORUFI06G04180 Oryza rufipogon ORUFI06G04180 I 0.708
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I 0.708
ORGLA06G0038600 Oryza glaberrima ORGLA06G0038600 I 0.708
OPUNC12G05660 Oryza punctata OPUNC12G05660 I 0.708
ONIVA10G18680 Oryza nivara ONIVA10G18680 I 0.708
ONIVA12G05640 Oryza nivara ONIVA12G05640 I 0.708
OPUNC06G04000 Oryza punctata OPUNC06G04000 I 0.708
Pm018087 Prunus mume Pm018087 I 0.708