Eucgr.K00201 (Eucalyptus grandis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Eucgr.K00201 T258008_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q9ATE7_PETHY
M11010_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP22_01
0.750 0.750
AGL42
M06995_2.00
Arabidopsis thaliana
RATGATG

CATCATY
Dap-seq
OMalley et al.(2016)
AGL42_col_a
0.708 0.708
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND

HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.708 0.708
SOC1
M10915_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.708 0.708
MADS5
M10970_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_02
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.K00201.1 MADS box 10 57
Eucgr.K00201.2 MADS box 10 57
Eucgr.K00201.3 MADS box 10 57
Eucgr.K00201.4 MADS box 10 57
Eucgr.K00201.5 MADS box 10 57
Eucgr.K00201.6 MADS box 10 57

Links

Other MADS box family TFs
Other Eucalyptus grandis TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00010p00144270 Amborella trichopoda AMTR_s00010p00144270 I 0.000
Aquca_007_00571 Aquilegia coerulea Aquca_007_00571 N 0.000
BGIOSGA026937 Oryza indica BGIOSGA026937 I 0.000
BGIOSGA029777 Oryza indica BGIOSGA029777 I 0.000
BHLH30 Arabidopsis thaliana AT1G68810 I 0.000
BHLH32 Arabidopsis lyrata fgenesh2_kg.5__324__AT3G25710.1 I 0.000
BHLH32 Arabidopsis thaliana AT3G25710 I 0.000
Bo2g138630 Brassica oleracea Bo2g138630 I 0.000
Bo6g108270 Brassica oleracea Bo6g108270 I 0.000
Bo7g081980 Brassica oleracea Bo7g081980 I 0.000
Bostr.0556s0241 Boechera stricta Bostr.0556s0241 I 0.000
Bostr.26959s0001 Boechera stricta Bostr.26959s0001 I 0.000
Bra004015 Brassica rapa Bra004015 I 0.000
Bra004338 Brassica rapa Bra004338 I 0.000
Bra025158 Brassica rapa Bra025158 I 0.000
Bra026510 Brassica rapa Bra026510 I 0.000
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I 0.000
Cagra.0417s0002 Capsella grandiflora Cagra.0417s0002 I 0.000
Cagra.1157s0003 Capsella grandiflora Cagra.1157s0003 I 0.000
Carubv10017470m.g Capsella rubella Carubv10017470m.g I 0.000
Carubv10020515m.g Capsella rubella Carubv10020515m.g I 0.000
Ca_24775 Cicer arietinum Ca_24775 I 0.000
chr1.CM0113.660.nd Lotus japonicus chr1.CM0113.660.nd N 0.000
chr2.CM0749.390.nc Lotus japonicus chr2.CM0749.390.nc I 0.000
Ciclev10020323m.g Citrus clementina Ciclev10020323m.g I 0.000
Cla000223 Citrullus lanatus Cla000223 I 0.000
evm.TU.supercontig_55.51 Carica papaya evm.TU.supercontig_55.51 N 0.000
evm.TU.supercontig_65.63 Carica papaya evm.TU.supercontig_65.63 N 0.000
F775_10096 Aegilops tauschii F775_10096 I 0.000
fgenesh2_kg.2__1138__AT1G68810.1 Arabidopsis lyrata fgenesh2_kg.2__1138__AT1G68810.1 I 0.000
gene20797-v1.0-hybrid Fragaria vesca gene20797-v1.0-hybrid N 0.000
GLYMA01G02930 Glycine max GLYMA01G02930 N 0.000
GLYMA01G22530 Glycine max GLYMA01G22530 I 0.000
GLYMA02G11190 Glycine max GLYMA02G11190 I 0.000
Gorai.012G124100 Gossypium raimondii Gorai.012G124100 N 0.000
GRMZM2G043854 Zea mays GRMZM2G043854 I 0.000
GRMZM2G107276 Zea mays GRMZM2G107276 I 0.000
GRMZM2G176141 Zea mays GRMZM2G176141 N 0.000
GRMZM2G526668 Zea mays GRMZM2G526668 I 0.000
GSMUA_Achr6G30610_001 Musa acuminata GSMUA_Achr6G30610_001 I 0.000
GSMUA_Achr7G07280_001 Musa acuminata GSMUA_Achr7G07280_001 I 0.000
LjT38P01.150.nd Lotus japonicus LjT38P01.150.nd N 0.000
LPERR03G10060 Leersia perrieri LPERR03G10060 I 0.000
LPERR08G12910 Leersia perrieri LPERR08G12910 I 0.000
LPERR09G06880 Leersia perrieri LPERR09G06880 I 0.000
Lus10034271.g Linum usitatissimum Lus10034271.g I 0.000
Lus10041493.g Linum usitatissimum Lus10041493.g I 0.000
MLOC_12832 Hordeum vulgare MLOC_12832 N 0.000
MLOC_66385 Hordeum vulgare MLOC_66385 I 0.000
OB03G21490 Oryza brachyantha OB03G21490 I 0.000
OBART03G11320 Oryza barthii OBART03G11320 I 0.000
OBART08G15650 Oryza barthii OBART08G15650 I 0.000
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I 0.000
OGLUM08G16400 Oryza glumaepatula OGLUM08G16400 I 0.000
OLONG_004075 Oryza longistaminata OLONG_004075 I 0.000
OLONG_011765 Oryza longistaminata OLONG_011765 N 0.000
OMERI08G12930 Oryza meridionalis OMERI08G12930 I 0.000
OMERI09G07780 Oryza meridionalis OMERI09G07780 I 0.000
ONIVA03G12280 Oryza nivara ONIVA03G12280 I 0.000
ONIVA08G16750 Oryza nivara ONIVA08G16750 I 0.000
ONIVA09G09550 Oryza nivara ONIVA09G09550 I 0.000
OPUNC08G13730 Oryza punctata OPUNC08G13730 I 0.000
orange1.1g026943m.g Citrus sinensis orange1.1g026943m.g I 0.000
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I 0.000
ORGLA08G0137400 Oryza glaberrima ORGLA08G0137400 I 0.000
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I 0.000
ORUFI08G17560 Oryza rufipogon ORUFI08G17560 I 0.000
ORUFI09G10670 Oryza rufipogon ORUFI09G10670 I 0.000
OS03G0260600 Oryza sativa OS03G0260600 I 0.000
OS08G0432800 Oryza sativa OS08G0432800 I 0.000
OS09G0410700 Oryza sativa OS09G0410700 I 0.000
Pavir.Ba01821 Panicum virgatum Pavir.Ba01821 N 0.000
Pavir.Bb02155 Panicum virgatum Pavir.Bb02155 N 0.000
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I 0.000
PGSC0003DMG400000824 Solanum tuberosum PGSC0003DMG400000824 I 0.000
PGSC0003DMG400023577 Solanum tuberosum PGSC0003DMG400023577 N 0.000
Pm002160 Prunus mume Pm002160 N 0.000
PRUPE_ppa019545mg Prunus persica PRUPE_ppa019545mg N 0.000
Sb01g040450 Sorghum bicolor Sb01g040450 I 0.000
Sb02g024460 Sorghum bicolor Sb02g024460 N 0.000
Sb07g021170 Sorghum bicolor Sb07g021170 I 0.000
SELMODRAFT_412681 Selaginella moellendorffii SELMODRAFT_412681 I 0.000
SELMODRAFT_417246 Selaginella moellendorffii SELMODRAFT_417246 I 0.000
Si013911m.g Setaria italica Si013911m.g I 0.000
Si030496m.g Setaria italica Si030496m.g N 0.000
Si039730m.g Setaria italica Si039730m.g I 0.000
Solyc04g006990.2 Solanum lycopersicum Solyc04g006990.2 I 0.000
Solyc04g014360.2 Solanum lycopersicum Solyc04g014360.2 N 0.000
Solyc05g009880.2 Solanum lycopersicum Solyc05g009880.2 I 0.000
TCM_000997 Theobroma cacao TCM_000997 N 0.000
Thhalv10004524m.g Eutrema salsugineum Thhalv10004524m.g I 0.000
Thhalv10018758m.g Eutrema salsugineum Thhalv10018758m.g I 0.000
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I 0.000
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I 0.000
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I 0.000
Traes_5BL_CF90A7CAE Triticum aestivum Traes_5BL_CF90A7CAE N 0.000
TRIUR3_31897 Triticum urartu TRIUR3_31897 I 0.000