CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
evm.TU.contig_35868
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.contig_35868
T258093_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.TU.contig_35868.1
MADS box
10
57
YITNNSARKATFKKRKKGFMKKVSELCILCKVKAYAIIYSPMTGNQRF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.contig_27586
Carica papaya
evm.TU.contig_27586
I
0.909
evm.TU.contig_37084
Carica papaya
evm.TU.contig_37084
I
0.826
evm.TU.contig_43368
Carica papaya
evm.TU.contig_43368
I
0.818
evm.TU.supercontig_1750.1
Carica papaya
evm.TU.supercontig_1750.1
I
0.818
evm.TU.contig_36181
Carica papaya
evm.TU.contig_36181
I
0.814
evm.TU.contig_40499.2
Carica papaya
evm.TU.contig_40499.2
I
0.800
evm.TU.supercontig_185.7
Carica papaya
evm.TU.supercontig_185.7
I
0.786
evm.TU.contig_28448.4
Carica papaya
evm.TU.contig_28448.4
I
0.778
evm.TU.supercontig_185.11
Carica papaya
evm.TU.supercontig_185.11
I
0.778
evm.TU.contig_33457.2
Carica papaya
evm.TU.contig_33457.2
I
0.778
evm.TU.supercontig_185.2
Carica papaya
evm.TU.supercontig_185.2
I
0.778
evm.TU.supercontig_1750.2
Carica papaya
evm.TU.supercontig_1750.2
I
0.761
evm.TU.supercontig_265.1
Carica papaya
evm.TU.supercontig_265.1
I
0.761
evm.TU.supercontig_34.40
Carica papaya
evm.TU.supercontig_34.40
N
0.756
MDP0000925348
Malus domestica
MDP0000925348
I
0.756
evm.TU.contig_26058.1
Carica papaya
evm.TU.contig_26058.1
I
0.756
evm.TU.supercontig_30.164
Carica papaya
evm.TU.supercontig_30.164
N
0.756
evm.TU.contig_38760
Carica papaya
evm.TU.contig_38760
N
0.756
evm.TU.supercontig_1237.1
Carica papaya
evm.TU.supercontig_1237.1
I
0.756
evm.TU.contig_35009
Carica papaya
evm.TU.contig_35009
I
0.750
evm.TU.contig_26058.2
Carica papaya
evm.TU.contig_26058.2
I
0.733
PRUPE_ppa018168mg
Prunus persica
PRUPE_ppa018168mg
I
0.733
Pm004396
Prunus mume
Pm004396
I
0.733
evm.TU.contig_24608
Carica papaya
evm.TU.contig_24608
I
0.733
evm.TU.contig_25982.2
Carica papaya
evm.TU.contig_25982.2
I
0.733
evm.TU.supercontig_185.6
Carica papaya
evm.TU.supercontig_185.6
N
0.731
evm.TU.contig_38146
Carica papaya
evm.TU.contig_38146
I
0.727
mgf026186m
Mimulus guttatus
mgf026186m
I
0.727
evm.TU.contig_40485
Carica papaya
evm.TU.contig_40485
I
0.727
evm.TU.contig_25049.5
Carica papaya
evm.TU.contig_25049.5
I
0.723
evm.TU.supercontig_265.6
Carica papaya
evm.TU.supercontig_265.6
N
0.711
Solyc01g102260.2
Solanum lycopersicum
Solyc01g102260.2
I
0.711
evm.TU.contig_25049.1
Carica papaya
evm.TU.contig_25049.1
I
0.711
evm.TU.supercontig_185.9
Carica papaya
evm.TU.supercontig_185.9
I
0.711
POPTR_0013s01880
Populus trichocarpa
POPTR_0013s01880
I
0.711
evm.TU.contig_44957
Carica papaya
evm.TU.contig_44957
I
0.711
evm.TU.contig_31147
Carica papaya
evm.TU.contig_31147
I
0.711
evm.TU.contig_25049.2
Carica papaya
evm.TU.contig_25049.2
N
0.711
Gorai.013G210200
Gossypium raimondii
Gorai.013G210200
I
0.708
evm.TU.supercontig_30.166
Carica papaya
evm.TU.supercontig_30.166
I
0.708
Ca_06495
Cicer arietinum
Ca_06495
I
0.705