CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
evm.TU.contig_44957
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.contig_44957
T258134_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.733
0.733
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.TU.contig_44957.1
MADS box
10
55
YITNNSTRKATFKKRKKELMKKVSELSTLCDVKACEIIYNPYDSQP
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
93 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ZNF235
Homo sapiens
ENSG00000159917
D
0.000
ENSMMUP00000016814
Macaca fascicularis
ENSMMUP00000016814
I
0.000
ZNF235
Macaca mulatta
ENSMMUG00000012801
I
0.000
ENSPANG00000006495
Papio anubis
ENSPANG00000006495
I
0.000
ENSPPYG00000010086
Pongo abelii
ENSPPYG00000010086
I
0.000
ZNF235
Pan troglodytes
ENSPTRG00000011112
I
0.000
ENSSTOG00000013458
Ictidomys tridecemlineatus
ENSSTOG00000013458
I
0.000
ZNF235
Tupaia belangeri
ENSTBEG00000001345
I
0.000
ZNF235
Tursiops truncatus
ENSTTRG00000006707
I
0.000
ZNF235
Myotis lucifugus
ENSMLUG00000013784
I
0.000
ZNF235
Loxodonta africana
ENSLAFG00000011186
I
0.000
ZNF235
Gorilla gorilla
ENSGGOG00000008607
I
0.000
ZNF235
Equus caballus
ENSECAG00000023724
I
0.000
ZNF235
Dasypus novemcinctus
ENSDNOG00000042106
I
0.000
ZNF235
Canis familiaris
ENSCAFG00000031857
I
0.000
ENSCSAG00000003323
Chlorocebus sabaeus
ENSCSAG00000003323
I
0.000
ENSCJAG00000013266
Callithrix jacchus
ENSCJAG00000013266
I
0.000
ZNF235
Vicugna pacos
ENSVPAG00000000139
N
0.000
ZNF235
Sus scrofa
ENSSSCG00000022434
N
0.000
ZNF235
Erinaceus europaeus
ENSEEUG00000006864
N
0.000
ZNF235
Bos taurus
ENSBTAG00000007714
N
0.000