evm.TU.supercontig_30.166 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.supercontig_30.166 T258223_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_30.166 MADS box 10 58

Links

Other MADS box family TFs
Other Carica papaya TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.867
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.766
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.750
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.875
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.792
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.818
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.957
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.889
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.729
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.818
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.933
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.773
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.938
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.750
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.941
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.889
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.818
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.837
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.783
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.862
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.833
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.857
MDP0000925348 Malus domestica MDP0000925348 I 0.833
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.771
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.771
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.771
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.708
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.729
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.729
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.724
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.704
MDP0000846004 Malus domestica MDP0000846004 I 0.833
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.729
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.867
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.957
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.854
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.771
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.833
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.792
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.723
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.750
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.729
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.729
Bra018490 Brassica rapa Bra018490 I 0.708
Ca_06495 Cicer arietinum Ca_06495 I 0.750
Ca_13275 Cicer arietinum Ca_13275 I 0.778
Cla005226 Citrullus lanatus Cla005226 I 0.756
Pm003257 Prunus mume Pm003257 I 0.745
Pm004396 Prunus mume Pm004396 I 0.844
30128.m008984 Ricinus communis 30128.m008984 I 0.771
30199.m000879 Ricinus communis 30199.m000879 I 0.787
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.711
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.812
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.756
mgf026186m Mimulus guttatus mgf026186m I 0.773
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.812
TCM_042799 Theobroma cacao TCM_042799 I 0.708
TCM_026842 Theobroma cacao TCM_026842 I 0.750
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.733
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.756
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.778
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.778
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.771
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.792
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.792
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.745
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.708
TCM_025670 Theobroma cacao TCM_025670 I 0.708
TCM_025671 Theobroma cacao TCM_025671 I 0.702
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.711
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.822
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.936
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.844
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.750
evm.TU.contig_25253.5 Carica papaya evm.TU.contig_25253.5 I 0.862
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.867
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.867
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.778
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.909
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.771
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.771
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.750
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.778
evm.TU.contig_28448.2 Carica papaya evm.TU.contig_28448.2 N 0.760
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.792
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.708
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.745
evm.TU.contig_25253.3 Carica papaya evm.TU.contig_25253.3 N 0.720
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N 0.708
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.778
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.756
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.723
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.745
evm.TU.supercontig_1136.1 Carica papaya evm.TU.supercontig_1136.1 N 0.720
evm.TU.supercontig_185.4 Carica papaya evm.TU.supercontig_185.4 N 0.760
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.769
evm.TU.contig_46342 Carica papaya evm.TU.contig_46342 N 0.833
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.783
evm.TU.contig_43908 Carica papaya evm.TU.contig_43908 N 0.760
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.723
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.729
evm.TU.supercontig_30.163 Carica papaya evm.TU.supercontig_30.163 N 0.833
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.792
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.778
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.723
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.708
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.783
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.729