CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_30.166
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_30.166
T258223_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.729
0.729
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_30.166
MADS box
10
58
YITNNSAIKATFKKRKKGLMKKVSELSTLCDVKACTIIYSPYDSQLDVW
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
111 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AGL80
Arabidopsis thaliana
AT5G48670
D
0.729
evm.TU.contig_44957
Carica papaya
evm.TU.contig_44957
I
0.867
evm.TU.supercontig_117.18
Carica papaya
evm.TU.supercontig_117.18
I
0.766
evm.TU.supercontig_118.30
Carica papaya
evm.TU.supercontig_118.30
I
0.750
evm.TU.supercontig_1237.1
Carica papaya
evm.TU.supercontig_1237.1
I
0.875
evm.TU.supercontig_139.40
Carica papaya
evm.TU.supercontig_139.40
I
0.792
evm.TU.supercontig_1750.1
Carica papaya
evm.TU.supercontig_1750.1
I
0.818
evm.TU.supercontig_1750.2
Carica papaya
evm.TU.supercontig_1750.2
I
0.957
evm.TU.supercontig_185.11
Carica papaya
evm.TU.supercontig_185.11
I
0.889
evm.TU.supercontig_185.12
Carica papaya
evm.TU.supercontig_185.12
I
0.729
evm.TU.contig_43368
Carica papaya
evm.TU.contig_43368
I
0.818
evm.TU.contig_40499.2
Carica papaya
evm.TU.contig_40499.2
I
0.933
evm.TU.contig_40485
Carica papaya
evm.TU.contig_40485
I
0.773
evm.TU.contig_28448.4
Carica papaya
evm.TU.contig_28448.4
I
0.938
evm.TU.contig_31147
Carica papaya
evm.TU.contig_31147
I
0.750
evm.TU.contig_32899.1
Carica papaya
evm.TU.contig_32899.1
I
0.941
evm.TU.contig_33457.2
Carica papaya
evm.TU.contig_33457.2
I
0.889
evm.TU.contig_35009
Carica papaya
evm.TU.contig_35009
I
0.818
evm.TU.contig_36181
Carica papaya
evm.TU.contig_36181
I
0.837
evm.TU.contig_37084
Carica papaya
evm.TU.contig_37084
I
0.783
evm.TU.contig_38146
Carica papaya
evm.TU.contig_38146
I
0.727
evm.TU.contig_40008
Carica papaya
evm.TU.contig_40008
I
0.862
evm.TU.supercontig_185.2
Carica papaya
evm.TU.supercontig_185.2
I
0.833
evm.TU.supercontig_185.7
Carica papaya
evm.TU.supercontig_185.7
I
0.857
MDP0000925348
Malus domestica
MDP0000925348
I
0.833
SapurV1A.0066s0310
Salix purpurea
SapurV1A.0066s0310
I
0.771
SapurV1A.0442s0180
Salix purpurea
SapurV1A.0442s0180
I
0.771
SapurV1A.0442s0190
Salix purpurea
SapurV1A.0442s0190
I
0.771
Thhalv10022373m.g
Eutrema salsugineum
Thhalv10022373m.g
I
0.708
Thhalv10023873m.g
Eutrema salsugineum
Thhalv10023873m.g
I
0.729
Thhalv10024119m.g
Eutrema salsugineum
Thhalv10024119m.g
I
0.729
LjSGA_104570.1
Lotus japonicus
LjSGA_104570.1
I
0.724
LjSGA_147985.1
Lotus japonicus
LjSGA_147985.1
I
0.704
MDP0000846004
Malus domestica
MDP0000846004
I
0.833
Lus10032108.g
Linum usitatissimum
Lus10032108.g
I
0.729
evm.TU.supercontig_185.9
Carica papaya
evm.TU.supercontig_185.9
I
0.867
evm.TU.supercontig_265.1
Carica papaya
evm.TU.supercontig_265.1
I
0.957
gene18029-v1.0-hybrid
Fragaria vesca
gene18029-v1.0-hybrid
I
0.854
gene22916-v1.0-hybrid
Fragaria vesca
gene22916-v1.0-hybrid
I
0.771
gene22967-v1.0-hybrid
Fragaria vesca
gene22967-v1.0-hybrid
I
0.833
gene23924-v1.0-hybrid
Fragaria vesca
gene23924-v1.0-hybrid
I
0.792
Gorai.004G292000
Gossypium raimondii
Gorai.004G292000
I
0.723
Gorai.013G210200
Gossypium raimondii
Gorai.013G210200
I
0.708
Lus10014578.g
Linum usitatissimum
Lus10014578.g
I
0.750
LjT40B16.70.nc
Lotus japonicus
LjT40B16.70.nc
I
0.729
evm.TU.contig_28089
Carica papaya
evm.TU.contig_28089
I
0.729
Bra018490
Brassica rapa
Bra018490
I
0.708
Ca_06495
Cicer arietinum
Ca_06495
I
0.750
Ca_13275
Cicer arietinum
Ca_13275
I
0.778
Cla005226
Citrullus lanatus
Cla005226
I
0.756
Pm003257
Prunus mume
Pm003257
I
0.745
Pm004396
Prunus mume
Pm004396
I
0.844
30128.m008984
Ricinus communis
30128.m008984
I
0.771
30199.m000879
Ricinus communis
30199.m000879
I
0.787
cassava15247.m1
Manihot esculenta
cassava15247.m1
I
0.711
cassava19828.m1
Manihot esculenta
cassava19828.m1
I
0.812
Cucsa.050930
Cucumis sativus
Cucsa.050930
I
0.756
mgf026186m
Mimulus guttatus
mgf026186m
I
0.773
VIT_14s0060g00300
Vitis vinifera
VIT_14s0060g00300
I
0.812
TCM_042799
Theobroma cacao
TCM_042799
I
0.708
TCM_026842
Theobroma cacao
TCM_026842
I
0.750
GLYMA11G33460
Glycine max
GLYMA11G33460
I
0.733
GLYMA18G04760
Glycine max
GLYMA18G04760
I
0.756
GSMUA_Achr3G05500_001
Musa acuminata
GSMUA_Achr3G05500_001
I
0.778
MTR_3g065100
Medicago truncatula
MTR_3g065100
I
0.778
POPTR_0005s00420
Populus trichocarpa
POPTR_0005s00420
I
0.771
POPTR_0013s00350
Populus trichocarpa
POPTR_0013s00350
I
0.792
POPTR_0013s01880
Populus trichocarpa
POPTR_0013s01880
I
0.792
PRUPE_ppa019749mg
Prunus persica
PRUPE_ppa019749mg
I
0.745
Solyc01g102260.2
Solanum lycopersicum
Solyc01g102260.2
I
0.708
TCM_025670
Theobroma cacao
TCM_025670
I
0.708
TCM_025671
Theobroma cacao
TCM_025671
I
0.702
Aquca_027_00068
Aquilegia coerulea
Aquca_027_00068
I
0.711
evm.TU.contig_25049.1
Carica papaya
evm.TU.contig_25049.1
I
0.822
evm.TU.contig_25049.5
Carica papaya
evm.TU.contig_25049.5
I
0.936
PRUPE_ppa018168mg
Prunus persica
PRUPE_ppa018168mg
I
0.844
evm.TU.contig_24608
Carica papaya
evm.TU.contig_24608
I
0.750
evm.TU.contig_25253.5
Carica papaya
evm.TU.contig_25253.5
I
0.862
evm.TU.contig_25982.2
Carica papaya
evm.TU.contig_25982.2
I
0.867
evm.TU.contig_26058.1
Carica papaya
evm.TU.contig_26058.1
I
0.867
evm.TU.contig_26058.2
Carica papaya
evm.TU.contig_26058.2
I
0.778
evm.TU.contig_27586
Carica papaya
evm.TU.contig_27586
I
0.909
Ciclev10013728m.g
Citrus clementina
Ciclev10013728m.g
I
0.771
Ciclev10006519m.g
Citrus clementina
Ciclev10006519m.g
I
0.771
Bostr.2570s0082
Boechera stricta
Bostr.2570s0082
I
0.750
evm.TU.contig_40164
Carica papaya
evm.TU.contig_40164
N
0.778
evm.TU.contig_28448.2
Carica papaya
evm.TU.contig_28448.2
N
0.760
evm.TU.contig_38760
Carica papaya
evm.TU.contig_38760
N
0.792
evm.TU.contig_25253.1
Carica papaya
evm.TU.contig_25253.1
N
0.708
evm.TU.contig_25253.2
Carica papaya
evm.TU.contig_25253.2
N
0.745
evm.TU.contig_25253.3
Carica papaya
evm.TU.contig_25253.3
N
0.720
evm.TU.contig_35868
Carica papaya
evm.TU.contig_35868
N
0.708
evm.TU.contig_35762
Carica papaya
evm.TU.contig_35762
N
0.778
evm.TU.contig_25049.2
Carica papaya
evm.TU.contig_25049.2
N
0.756
evm.TU.contig_28448.1
Carica papaya
evm.TU.contig_28448.1
N
0.723
evm.TU.supercontig_1256.1
Carica papaya
evm.TU.supercontig_1256.1
N
0.745
evm.TU.supercontig_1136.1
Carica papaya
evm.TU.supercontig_1136.1
N
0.720
evm.TU.supercontig_185.4
Carica papaya
evm.TU.supercontig_185.4
N
0.760
evm.TU.supercontig_185.6
Carica papaya
evm.TU.supercontig_185.6
N
0.769
evm.TU.contig_46342
Carica papaya
evm.TU.contig_46342
N
0.833
evm.TU.supercontig_185.8
Carica papaya
evm.TU.supercontig_185.8
N
0.783
evm.TU.contig_43908
Carica papaya
evm.TU.contig_43908
N
0.760
evm.TU.supercontig_265.3
Carica papaya
evm.TU.supercontig_265.3
N
0.723
evm.TU.supercontig_265.6
Carica papaya
evm.TU.supercontig_265.6
N
0.729
evm.TU.supercontig_30.163
Carica papaya
evm.TU.supercontig_30.163
N
0.833
evm.TU.supercontig_30.164
Carica papaya
evm.TU.supercontig_30.164
N
0.792
evm.TU.supercontig_34.40
Carica papaya
evm.TU.supercontig_34.40
N
0.778
evm.TU.supercontig_358.1
Carica papaya
evm.TU.supercontig_358.1
N
0.723
gene15899-v1.0-hybrid
Fragaria vesca
gene15899-v1.0-hybrid
N
0.708
evm.TU.contig_24864.1
Carica papaya
evm.TU.contig_24864.1
N
0.783
evm.TU.supercontig_135.5
Carica papaya
evm.TU.supercontig_135.5
N
0.729