gene04949-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene04949-v1.0-hybrid T258305_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna04949.1-v1.0-hybrid MADS box 10 58

Links

Other MADS box family TFs
Other Fragaria vesca TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.812
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.792
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.792
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.771
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.771
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.771
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.750
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.750
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.750
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.750
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.750
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.729
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.729
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.729
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.729
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.729
TCM_026842 Theobroma cacao TCM_026842 I 0.729
30128.m008984 Ricinus communis 30128.m008984 I 0.729
TCM_042799 Theobroma cacao TCM_042799 I 0.729
Cla005226 Citrullus lanatus Cla005226 I 0.711
AGL80 Arabidopsis thaliana AT5G48670 D 0.708
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.708
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.708
Bo2g104810 Brassica oleracea Bo2g104810 I 0.708
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.708
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.708
MDP0000846004 Malus domestica MDP0000846004 I 0.708
30199.m000879 Ricinus communis 30199.m000879 I 0.708