gene05180-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene05180-v1.0-hybrid T258307_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.745 0.745
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.745 0.745
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.745 0.745
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna05180.1-v1.0-hybrid MADS box 52 98

Links

Other MADS box family TFs
Other Fragaria vesca TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.915
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.809
gene03748-v1.0-hybrid Fragaria vesca gene03748-v1.0-hybrid I 0.809
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.809
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.809
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.809
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.792
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.787
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.787
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.787
gene03714-v1.0-hybrid Fragaria vesca gene03714-v1.0-hybrid I 0.787
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.787
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.771
PRUPE_ppa018667mg Prunus persica PRUPE_ppa018667mg I 0.771
TCM_034501 Theobroma cacao TCM_034501 I 0.771
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.771
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.771
PRUPE_ppa010714mg Prunus persica PRUPE_ppa010714mg I 0.766
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.766
Solyc01g087990.2 Solanum lycopersicum Solyc01g087990.2 I 0.766
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.766
MDP0000255146 Malus domestica MDP0000255146 I 0.766
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.766
Cla014322 Citrullus lanatus Cla014322 I 0.766
Cla022499 Citrullus lanatus Cla022499 I 0.766
Pm004416 Prunus mume Pm004416 I 0.766
Bo7g109590 Brassica oleracea Bo7g109590 I 0.766
Pm004420 Prunus mume Pm004420 I 0.766
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I 0.766
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.750
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.750
gene11073-v1.0-hybrid Fragaria vesca gene11073-v1.0-hybrid N 0.750
MDP0000233948 Malus domestica MDP0000233948 I 0.750
PRUPE_ppa011123mg Prunus persica PRUPE_ppa011123mg I 0.745
PRUPE_ppb017585mg Prunus persica PRUPE_ppb017585mg I 0.745
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.745
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.745
Pm004419 Prunus mume Pm004419 I 0.745
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.745
Pm002166 Prunus mume Pm002166 I 0.745
Pm004415 Prunus mume Pm004415 I 0.745
Pm004417 Prunus mume Pm004417 I 0.745
SVP Vitis vinifera VIT_00s0313g00070 I 0.745
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.745
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.745
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.745
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.745
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.745
mgf015964m Mimulus guttatus mgf015964m I 0.745
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.745
gene05027-v1.0-hybrid Fragaria vesca gene05027-v1.0-hybrid I 0.745
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.745
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.745
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.745
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.745
MDP0000209705 Malus domestica MDP0000209705 I 0.745
MDP0000322567 Malus domestica MDP0000322567 I 0.745
Bra038511 Brassica rapa Bra038511 I 0.745
Bra019221 Brassica rapa Bra019221 I 0.745
AGL24 Arabidopsis thaliana AT4G24540 I 0.745
SVP Arabidopsis thaliana AT2G22540 D 0.745
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.745
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.745
Bo8g101000 Brassica oleracea Bo8g101000 I 0.745
MDP0000144516 Malus domestica MDP0000144516 I 0.745
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.745
MDP0000135652 Malus domestica MDP0000135652 I 0.745
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.745
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.745
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.745
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.745
PGSC0003DMG401006771 Solanum tuberosum PGSC0003DMG401006771 I 0.745
OB11G21480 Oryza brachyantha OB11G21480 I 0.743
Mef2c Mus musculus ENSMUSG00000005583 D 0.739
Bo1g039080 Brassica oleracea Bo1g039080 I 0.729
Bra013812 Brassica rapa Bra013812 I 0.729
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.723
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.723
Pm004418 Prunus mume Pm004418 I 0.723
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.723
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.723
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I 0.723
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.723
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.723
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.723
gene12119-v1.0-hybrid Fragaria vesca gene12119-v1.0-hybrid I 0.723
Pm022002 Prunus mume Pm022002 I 0.723
Ca_21060 Cicer arietinum Ca_21060 I 0.723
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.723
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.723
PRUPE_ppa010758mg Prunus persica PRUPE_ppa010758mg I 0.723
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.723
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.723
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I 0.723
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.723
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.723
MTR_1g053070 Medicago truncatula MTR_1g053070 I 0.723
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.723
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.723
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.723
Bra030228 Brassica rapa Bra030228 I 0.723
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.723
Bo4g149800 Brassica oleracea Bo4g149800 I 0.723
Traes_7DS_D435DF316 Triticum aestivum Traes_7DS_D435DF316 I 0.723
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.723
Ca_19854 Cicer arietinum Ca_19854 I 0.723
Traes_7BS_592EC3AB1 Triticum aestivum Traes_7BS_592EC3AB1 I 0.723
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.723
ENSMICG00000005703 Microcebus murinus ENSMICG00000005703 I 0.711
TCM_007378 Theobroma cacao TCM_007378 I 0.708
MDP0000311107 Malus domestica MDP0000311107 N 0.708
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I 0.708
29838.m001690 Ricinus communis 29838.m001690 I 0.708
MDP0000277582 Malus domestica MDP0000277582 N 0.708
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.708
Carubv10005653m.g Capsella rubella Carubv10005653m.g I 0.708
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.702
MDP0000143531 Malus domestica MDP0000143531 N 0.702
Lus10039580.g Linum usitatissimum Lus10039580.g I 0.702
MDP0000259294 Malus domestica MDP0000259294 I 0.702
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.702
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.702
PK20651.1 Cannabis sativa PK20651.1 I 0.702
SapurV1A.4677s0010 Salix purpurea SapurV1A.4677s0010 I 0.702
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.702
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.702
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.702
SapurV1A.0278s0350 Salix purpurea SapurV1A.0278s0350 I 0.702
MDP0000378412 Malus domestica MDP0000378412 I 0.702
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.702
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.702
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.702
TCM_000992 Theobroma cacao TCM_000992 I 0.702
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.702
Si037358m.g Setaria italica Si037358m.g I 0.702
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.702
Eucgr.F02145 Eucalyptus grandis Eucgr.F02145 I 0.702
Traes_7AS_C25A349A9 Triticum aestivum Traes_7AS_C25A349A9 I 0.702
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.702
VIT_15s0024g02000 Vitis vinifera VIT_15s0024g02000 I 0.702
Ca_12416 Cicer arietinum Ca_12416 I 0.702
VIT_03s0017g00450 Vitis vinifera VIT_03s0017g00450 I 0.702
TRIUR3_24374 Triticum urartu TRIUR3_24374 I 0.702
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.702
Eucgr.F02146 Eucalyptus grandis Eucgr.F02146 I 0.702
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.702
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.702
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.702
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.702
OBART03G06320 Oryza barthii OBART03G06320 I 0.702
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.702
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.702
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.702
OS03G0186600 Oryza sativa OS03G0186600 I 0.702
POPTR_0001s33600 Populus trichocarpa POPTR_0001s33600 I 0.702
Lus10005325.g Linum usitatissimum Lus10005325.g I 0.702
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.702
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.702
POPTR_0017s07170 Populus trichocarpa POPTR_0017s07170 I 0.702
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.700