gene05180-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene05180-v1.0-hybrid T258307_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.745 0.745
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.745 0.745
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.745 0.745
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna05180.1-v1.0-hybrid MADS box 52 98

Links

Other MADS box family TFs
Other Fragaria vesca TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29838.m001690 Ricinus communis 29838.m001690 I 0.708
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.702
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.750
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.787
SVP Arabidopsis thaliana AT2G22540 D 0.745
AGL24 Arabidopsis thaliana AT4G24540 I 0.745
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.702
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.700
Bo1g039080 Brassica oleracea Bo1g039080 I 0.729
Bo4g149800 Brassica oleracea Bo4g149800 I 0.723
Bo7g109590 Brassica oleracea Bo7g109590 I 0.766
Bo8g101000 Brassica oleracea Bo8g101000 I 0.745
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.745
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.745
Bra013812 Brassica rapa Bra013812 I 0.729
Bra019221 Brassica rapa Bra019221 I 0.745
Bra030228 Brassica rapa Bra030228 I 0.723
Bra038511 Brassica rapa Bra038511 I 0.745
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.745
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I 0.708
Carubv10005653m.g Capsella rubella Carubv10005653m.g I 0.708
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.745
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.771
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.771
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.771
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.745
Ca_12416 Cicer arietinum Ca_12416 I 0.702
Ca_19854 Cicer arietinum Ca_19854 I 0.723
Ca_21060 Cicer arietinum Ca_21060 I 0.723
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.745
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.723
Cla014322 Citrullus lanatus Cla014322 I 0.766
Cla022499 Citrullus lanatus Cla022499 I 0.766
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.766
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.745
ENSMICG00000005703 Microcebus murinus ENSMICG00000005703 I 0.711
Mef2c Mus musculus ENSMUSG00000005583 D 0.739
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.792
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.723
Eucgr.F02145 Eucalyptus grandis Eucgr.F02145 I 0.702
Eucgr.F02146 Eucalyptus grandis Eucgr.F02146 I 0.702
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.702
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.723
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.723
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.702
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.702
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.745
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.745
gene03714-v1.0-hybrid Fragaria vesca gene03714-v1.0-hybrid I 0.787
gene03748-v1.0-hybrid Fragaria vesca gene03748-v1.0-hybrid I 0.809
gene05027-v1.0-hybrid Fragaria vesca gene05027-v1.0-hybrid I 0.745
gene11073-v1.0-hybrid Fragaria vesca gene11073-v1.0-hybrid N 0.750
gene12119-v1.0-hybrid Fragaria vesca gene12119-v1.0-hybrid I 0.723
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.915
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.750
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.745
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.723
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.745
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.723
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.723
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.702
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.723
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.809
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.766
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I 0.723
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.702
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.809
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.702
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.702
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.702
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.723
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.723
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.702
Lus10005325.g Linum usitatissimum Lus10005325.g I 0.702
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.745
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.745
Lus10039580.g Linum usitatissimum Lus10039580.g I 0.702
MDP0000135652 Malus domestica MDP0000135652 I 0.745
MDP0000143531 Malus domestica MDP0000143531 N 0.702
MDP0000144516 Malus domestica MDP0000144516 I 0.745
MDP0000209705 Malus domestica MDP0000209705 I 0.745
MDP0000233948 Malus domestica MDP0000233948 I 0.750
MDP0000255146 Malus domestica MDP0000255146 I 0.766
MDP0000259294 Malus domestica MDP0000259294 I 0.702
MDP0000277582 Malus domestica MDP0000277582 N 0.708
MDP0000311107 Malus domestica MDP0000311107 N 0.708
MDP0000322567 Malus domestica MDP0000322567 I 0.745
MDP0000378412 Malus domestica MDP0000378412 I 0.702
mgf015964m Mimulus guttatus mgf015964m I 0.745
MTR_1g053070 Medicago truncatula MTR_1g053070 I 0.723
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.708
OB11G21480 Oryza brachyantha OB11G21480 I 0.743
OBART03G06320 Oryza barthii OBART03G06320 I 0.702
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.702
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.702
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.702
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.702
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.787
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.745
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.787
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.702
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.702
OS03G0186600 Oryza sativa OS03G0186600 I 0.702
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.702
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.766
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.745
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.723
PGSC0003DMG401006771 Solanum tuberosum PGSC0003DMG401006771 I 0.745
PK20651.1 Cannabis sativa PK20651.1 I 0.702
Pm002166 Prunus mume Pm002166 I 0.745
Pm004415 Prunus mume Pm004415 I 0.745
Pm004416 Prunus mume Pm004416 I 0.766
Pm004417 Prunus mume Pm004417 I 0.745
Pm004418 Prunus mume Pm004418 I 0.723
Pm004419 Prunus mume Pm004419 I 0.745
Pm004420 Prunus mume Pm004420 I 0.766
Pm022002 Prunus mume Pm022002 I 0.723
POPTR_0001s33600 Populus trichocarpa POPTR_0001s33600 I 0.702
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.809
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.723
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I 0.723
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.745
POPTR_0017s07170 Populus trichocarpa POPTR_0017s07170 I 0.702
PRUPE_ppa010714mg Prunus persica PRUPE_ppa010714mg I 0.766
PRUPE_ppa010758mg Prunus persica PRUPE_ppa010758mg I 0.723
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I 0.766
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.745
PRUPE_ppa011123mg Prunus persica PRUPE_ppa011123mg I 0.745
PRUPE_ppa018667mg Prunus persica PRUPE_ppa018667mg I 0.771
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.723
PRUPE_ppb017585mg Prunus persica PRUPE_ppb017585mg I 0.745
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.809
SapurV1A.0068s0650 Salix purpurea SapurV1A.0068s0650 I 0.702
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.723
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.723
SapurV1A.0278s0350 Salix purpurea SapurV1A.0278s0350 I 0.702
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.702
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.745
SapurV1A.4677s0010 Salix purpurea SapurV1A.4677s0010 I 0.702
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.702
Si037358m.g Setaria italica Si037358m.g I 0.702
Solyc01g087990.2 Solanum lycopersicum Solyc01g087990.2 I 0.766
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.723
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.745
TCM_000992 Theobroma cacao TCM_000992 I 0.702
TCM_007378 Theobroma cacao TCM_007378 I 0.708
TCM_034501 Theobroma cacao TCM_034501 I 0.771
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.745
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.723
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.702
Traes_7AS_C25A349A9 Triticum aestivum Traes_7AS_C25A349A9 I 0.702
Traes_7BS_592EC3AB1 Triticum aestivum Traes_7BS_592EC3AB1 I 0.723
Traes_7DS_D435DF316 Triticum aestivum Traes_7DS_D435DF316 I 0.723
TRIUR3_24374 Triticum urartu TRIUR3_24374 I 0.702
SVP Vitis vinifera VIT_00s0313g00070 I 0.745
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.723
VIT_03s0017g00450 Vitis vinifera VIT_03s0017g00450 I 0.702
VIT_15s0024g02000 Vitis vinifera VIT_15s0024g02000 I 0.702
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.723
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.787