gene14896-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene14896-v1.0-hybrid T258331_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.896 0.896
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.812 0.812
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.812 0.812
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.812 0.812
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.750 0.750
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.729 0.729
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna14896.1-v1.0-hybrid MADS box 10 57

Links

Other MADS box family TFs
Other Fragaria vesca TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000184294 Malus domestica MDP0000184294 I 0.896
MDP0000133037 Malus domestica MDP0000133037 I 0.896
MDP0000224779 Malus domestica MDP0000224779 I 0.896
MDP0000315938 Malus domestica MDP0000315938 I 0.896
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.896
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.875
Pm026712 Prunus mume Pm026712 I 0.872
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.854
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.854
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.854
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.854
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.854
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.854
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.833
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.833
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.833
29782.m000119 Ricinus communis 29782.m000119 I 0.833
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.833
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.833
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.833
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.833
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.833
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.833
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.833
Pm006266 Prunus mume Pm006266 I 0.833
TCM_000266 Theobroma cacao TCM_000266 I 0.833
AP3 Vitis vinifera VIT_18s0001g13460 I 0.833
Ca_04909 Cicer arietinum Ca_04909 I 0.812
Cla021117 Citrullus lanatus Cla021117 I 0.812
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.812
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.812
AP3 Arabidopsis thaliana AT3G54340 D 0.812
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.812
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.812
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.812
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.812
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.812
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.812
mgf015533m Mimulus guttatus mgf015533m I 0.812
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.812
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.812
Ca_01994 Cicer arietinum Ca_01994 I 0.812
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.812
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.812
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.812
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.812
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.812
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.812
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.812
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.812
TCM_034148 Theobroma cacao TCM_034148 I 0.792
Bra014822 Brassica rapa Bra014822 I 0.792
Bo4g120010 Brassica oleracea Bo4g120010 I 0.792
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.792
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.792
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.792
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.792
Bo8g083600 Brassica oleracea Bo8g083600 I 0.792
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.792
Bra007067 Brassica rapa Bra007067 I 0.792
AP3 Populus trichocarpa POPTR_0002s02990 I 0.792
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.792
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.792
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.792
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.792
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.771
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.771
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.771
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.771
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.771
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.771
mgf000046m Mimulus guttatus mgf000046m I 0.766
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.750
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.750
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.750
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.750
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.750
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.750
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.750
MADS16 Oryza sativa OS06G0712700 D 0.750
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.750
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.750
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.750
Si007221m.g Setaria italica Si007221m.g I 0.750
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.750
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.750
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.750
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.750
OBART06G27230 Oryza barthii OBART06G27230 I 0.750
OB06G35020 Oryza brachyantha OB06G35020 I 0.750
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.750
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.750
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.750
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.750
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.750
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.750
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.729
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.729
29648.m001978 Ricinus communis 29648.m001978 I 0.729
TCM_035212 Theobroma cacao TCM_035212 I 0.729
PI Vitis vinifera VIT_18s0001g01760 I 0.729
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.729
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.729
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.729
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.729
Cla023547 Citrullus lanatus Cla023547 I 0.708
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.708
OPUNC06G24880 Oryza punctata OPUNC06G24880 I 0.708
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.708
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.708
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.708
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.708
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.708
Aquca_006_00074 Aquilegia coerulea Aquca_006_00074 I 0.708
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.708