gene20015-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene20015-v1.0-hybrid T258346_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FBP24_PETHY
M10997_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.854 0.854
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.750 0.750
AP1
M08144_2.00
Arabidopsis thaliana
MYAAAAAWRGAAA

TTTCYWTTTTTRK
ChIP-seq
Mathelier et al.(2014)
MA0940.1
0.708 0.708
Q9ATE9_PETHY
M11012_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP20_01
0.708 0.708
AP1
M10905_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSA_Q2
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna20015.1-v1.0-hybrid MADS box 10 57

Links

Other MADS box family TFs
Other Fragaria vesca TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MDP0000278738 Malus domestica MDP0000278738 I 0.938
MDP0000128016 Malus domestica MDP0000128016 I 0.938
PRUPE_ppa014844mg Prunus persica PRUPE_ppa014844mg I 0.938
Pm010767 Prunus mume Pm010767 I 0.938
MDP0000181583 Malus domestica MDP0000181583 I 0.938
Gorai.013G069000 Gossypium raimondii Gorai.013G069000 I 0.896
cassava5692.m1 Manihot esculenta cassava5692.m1 I 0.896
30221.m002218 Ricinus communis 30221.m002218 I 0.896
MDP0000179718 Malus domestica MDP0000179718 I 0.879
TCM_007713 Theobroma cacao TCM_007713 I 0.875
XM_002310609.1 Populus trichocarpa POPTR_0007s07620 I 0.875
evm.TU.supercontig_30.148 Carica papaya evm.TU.supercontig_30.148 I 0.875
cassava9889.m1 Manihot esculenta cassava9889.m1 I 0.875
Gorai.012G134200 Gossypium raimondii Gorai.012G134200 I 0.875
Ciclev10032489m.g Citrus clementina Ciclev10032489m.g I 0.875
orange1.1g036652m.g Citrus sinensis orange1.1g036652m.g I 0.875
TT16 Vitis vinifera VIT_10s0042g00820 I 0.875
POPTR_0005s09340 Populus trichocarpa POPTR_0005s09340 I 0.854
FBP24_PETHY Petunia x hybrida FBP24_PETHY D 0.854
SapurV1A.0333s0300 Salix purpurea SapurV1A.0333s0300 I 0.854
SapurV1A.4660s0010 Salix purpurea SapurV1A.4660s0010 I 0.854
Ca_22438 Cicer arietinum Ca_22438 I 0.833
Lus10010184.g Linum usitatissimum Lus10010184.g I 0.833
Solyc11g005120.1 Solanum lycopersicum Solyc11g005120.1 I 0.833
Lus10017388.g Linum usitatissimum Lus10017388.g I 0.833
SapurV1A.0103s0250 Salix purpurea SapurV1A.0103s0250 I 0.812
MTR_1g038300 Medicago truncatula MTR_1g038300 I 0.812
GOA Vitis vinifera VIT_02s0025g02350 I 0.812
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.793
Cla010047 Citrullus lanatus Cla010047 I 0.792
GLYMA09G42061 Glycine max GLYMA09G42061 I 0.792
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.792
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.792
GLYMA20G00401 Glycine max GLYMA20G00401 I 0.771
TT16 Vitis vinifera VIT_01s0011g01560 I 0.771
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.771
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.771
MADS29 Oryza sativa OS02G0170300 I 0.750
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.750
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.750
Si018183m.g Setaria italica Si018183m.g I 0.750
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.750
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.750
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.750
M17_MAIZE Zea mays M17_MAIZE D 0.750
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.750
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.750
GLYMA09G27461 Glycine max GLYMA09G27461 I 0.750
GLYMA10G38580 Glycine max GLYMA10G38580 I 0.750
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.750
AMTR_s00001p00270400 Amborella trichopoda AMTR_s00001p00270400 I 0.750
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.750
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.750
OB02G14670 Oryza brachyantha OB02G14670 I 0.750
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.750
OBART02G05380 Oryza barthii OBART02G05380 I 0.750
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.743
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.733
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.729
SapurV1A.0129s0140 Salix purpurea SapurV1A.0129s0140 I 0.729
SapurV1A.0129s0130 Salix purpurea SapurV1A.0129s0130 I 0.729
SapurV1A.0129s0120 Salix purpurea SapurV1A.0129s0120 I 0.729
mgf008634m Mimulus guttatus mgf008634m I 0.729
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.729
Traes_6AS_57E50EE92 Triticum aestivum Traes_6AS_57E50EE92 I 0.729
Bra013028 Brassica rapa Bra013028 I 0.729
Bra026507 Brassica rapa Bra026507 I 0.729
Bra012997 Brassica rapa Bra012997 I 0.729
Bo9g014270 Brassica oleracea Bo9g014270 I 0.729
GLYMA20G29250 Glycine max GLYMA20G29250 I 0.729
MLOC_65966 Hordeum vulgare MLOC_65966 I 0.729
BRADI3G05260 Brachypodium distachyon BRADI3G05260 I 0.729
GRMZM2G130382 Zea mays GRMZM2G130382 I 0.729
GLYMA16G32540 Glycine max GLYMA16G32540 I 0.729
TRIUR3_26896 Triticum urartu TRIUR3_26896 I 0.729
F775_30836 Aegilops tauschii F775_30836 I 0.729
Bo7g097810 Brassica oleracea Bo7g097810 I 0.729
Bo7g098190 Brassica oleracea Bo7g098190 I 0.729
Traes_6BS_5789476CB Triticum aestivum Traes_6BS_5789476CB I 0.729
POPTR_0012s14770 Populus trichocarpa POPTR_0012s14770 I 0.729
Traes_6DS_9BBDCC9F7 Triticum aestivum Traes_6DS_9BBDCC9F7 I 0.729
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.722
PK27158.1 Cannabis sativa PK27158.1 I 0.714
chr1.CM0163.120.nc Lotus japonicus chr1.CM0163.120.nc I 0.708
MDP0000192806 Malus domestica MDP0000192806 I 0.708
chr5.CM0953.150.nc Lotus japonicus chr5.CM0953.150.nc I 0.708
AP1 Arabidopsis lyrata fgenesh2_kg.2__1169__AT1G69120.1 I 0.708
CM0547.50.nc Lotus japonicus CM0547.50.nc I 0.708
MDP0000233948 Malus domestica MDP0000233948 I 0.708
Thhalv10019025m.g Eutrema salsugineum Thhalv10019025m.g I 0.708
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.708
AMTR_s00002p00262770 Amborella trichopoda AMTR_s00002p00262770 I 0.708
PK26896.1 Cannabis sativa PK26896.1 I 0.708
Bra035952 Brassica rapa Bra035952 I 0.708
AP1 Arabidopsis thaliana AT1G69120 D 0.708
Bra038326 Brassica rapa Bra038326 I 0.708
MDP0000193953 Malus domestica MDP0000193953 I 0.708
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.708
Pm030594 Prunus mume Pm030594 I 0.708
Q9ATE9_PETHY Petunia x hybrida Q9ATE9_PETHY D 0.708
PGSC0003DMG400028359 Solanum tuberosum PGSC0003DMG400028359 I 0.708
MTR_6g464720 Medicago truncatula MTR_6g464720 I 0.708
TCM_015674 Theobroma cacao TCM_015674 I 0.708
Cla006333 Citrullus lanatus Cla006333 I 0.708
VIT_03s0097g00160 Vitis vinifera VIT_03s0097g00160 I 0.708
Ca_04518 Cicer arietinum Ca_04518 I 0.708
Ca_19954 Cicer arietinum Ca_19954 I 0.708
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.708
MTR_4g036050 Medicago truncatula MTR_4g036050 I 0.708
fgenesh1_pg.scaffold_267000029 Physcomitrella patens fgenesh1_pg.scaffold_267000029 I 0.708
evm.TU.supercontig_3486.1 Carica papaya evm.TU.supercontig_3486.1 I 0.708
Carubv10022005m.g Capsella rubella Carubv10022005m.g I 0.708
Eucgr.B00634 Eucalyptus grandis Eucgr.B00634 I 0.708
Cagra.1157s0032 Capsella grandiflora Cagra.1157s0032 I 0.708
Bostr.10273s0459 Boechera stricta Bostr.10273s0459 I 0.708
MTR_1g101970 Medicago truncatula MTR_1g101970 I 0.708
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
mgf022278m Mimulus guttatus mgf022278m I 0.708
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.708
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.702
Pm004239 Prunus mume Pm004239 I 0.702
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.700