gene20134-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene20134-v1.0-hybrid T258347_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL6
M06986_2.00
Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW

WWNTTWCYWTTTTDGGWAA
Dap-seq
OMalley et al.(2016)
AGL6_col_a
0.812 0.812
Q9LEH9_HORVU
M10983_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM9_01
0.812 0.812
Q9ATF1_PETHY
M11013_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP9_01
0.812 0.812
MAD17_ORYSJ
M10961_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS17_01
0.812 0.812
Q9ST54_MALDO
M11029_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_04
0.812 0.812
Q9LM09_TOBAC
M11016_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS4_01
0.812 0.812
MADS6
M10967_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS6_01
0.812 0.812
O82697_MALDO
M11020_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_01
0.812 0.812
squamosa
M02697_2.00
Antirrhinum majus
MYAWAWAWRGHAAN

NTTDCYWTWTWTRK
SELEX
Mathelier et al.(2014)
MA0082.1
0.792 0.792
SEP1
M02696_2.00
Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB

VWTDCYAWWWWTGGNWHN
SELEX
Mathelier et al.(2014)
MA0584.1
0.792 0.792
SEP3
M08143_2.00
Arabidopsis thaliana
CCAAAAAWRGN

NCYWTTTTTGG
ChIP-seq
Mathelier et al.(2014)
MA0563.1
0.792 0.792
SEP1
M10929_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_01
0.792 0.792
SEP1
M10930_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL2_02
0.792 0.792
SEP2
M10916_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL4_01
0.792 0.792
SEP3
M10902_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL9_01
0.792 0.792
AGL9_PETHY
M10993_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP2_01
0.792 0.792
Q9ATE6_PETHY
M11009_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP23_01
0.792 0.792
Q9ATF3_PETHY
M11015_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP4_01
0.792 0.792
O82084_MALDO
M11018_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_01
0.792 0.792
O82699_MALDO
M11022_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.792 0.792
Q6UGQ8_PETHY
M11005_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS12_01
0.792 0.792
O82695_MALDO
M11019_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_01
0.792 0.792
MADS7
M10975_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS7_02
0.792 0.792
MADS8
M10976_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_01
0.792 0.792
Q9SBA6_MALDO
M11028_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS8_02
0.792 0.792
Q38742_ANTMA
M11000_2.00
Antirrhinum majus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SQUA_01
0.792 0.792
MADS18
M10973_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS18_01
0.771 0.771
MADS5
M10970_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS5_02
0.771 0.771
Solyc05g012020.2
M10986_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_01
0.771 0.771
Solyc05g012020.2
M10987_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2_01
0.771 0.771
Solyc05g012020.2
M10988_2.00
Solanum lycopersicum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$RIN_Q2
0.771 0.771
AGL3
M02693_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN

NNWNCYWWWWWTGGNWHB
SELEX
Mathelier et al.(2014)
MA0001.2
0.750 0.750
AG
M02695_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHADN

NHTDCCHNWTWWGGWAAD
SELEX
Mathelier et al.(2014)
MA0005.2
0.750 0.750
AP1
M08144_2.00
Arabidopsis thaliana
MYAAAAAWRGAAA

TTTCYWTTTTTRK
ChIP-seq
Mathelier et al.(2014)
MA0940.1
0.750 0.750
AG
M10923_2.00
Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN

NHTDCCHNWTWWGGWAAD
Transfac
Matys et al.(2006)
P$AG_01
0.750 0.750
AG
M10924_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_02
0.750 0.750
AG
M10925_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_03
0.750 0.750
AG_TOBAC
M10995_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG1_02
0.750 0.750
AGL3
M10908_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN

NNWNCYWWWWWTGGNWHB
Transfac
Matys et al.(2006)
P$AGL3_01
0.750 0.750
AGL3
M10909_2.00
Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN

NNWDCYAWWWWTGGNAHN
Transfac
Matys et al.(2006)
P$AGL3_02
0.750 0.750
AGL3
M10910_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL3_03
0.750 0.750
AG
M10926_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AG_Q2
0.750 0.750
A1YJE4_HORVD
M10900_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM10_01
0.750 0.750
Q9LEI3_HORVU
M10985_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM3_01
0.750 0.750
Q9LEI1_HORVU
M10984_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM7_01
0.750 0.750
Q9ATE2_PETHY
M11007_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP29_01
0.750 0.750
Q9ATF2_PETHY
M11014_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP5_01
0.750 0.750
Q08711_PETHY
M10999_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP6_01
0.750 0.750
MADS1
M10969_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS1_02
0.750 0.750
Q8GT99_TOBAC
M11006_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_02
0.750 0.750
Q9ZRA5_MALDO
M11030_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_04
0.750 0.750
MADS3_ORYSJ
M10963_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_01
0.750 0.750
AG_PETHY
M10994_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_02
0.750 0.750
MADS50
M10968_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS50_01
0.750 0.750
AP1
M10905_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSA_Q2
0.750 0.750
Q9SBQ1_PETHY
M11017_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PFG_01
0.750 0.750
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.729 0.729
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.729 0.729
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.729 0.729
MLOC_61901
M10964_2.00
Hordeum vulgare Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BM8_01
0.729 0.729
Q7X9I6_MALDO
M11023_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS12_02
0.729 0.729
MAD14_ORYSJ
M10960_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_01
0.729 0.729
Q8VWZ3_MALDO
M11025_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS14_02
0.729 0.729
MADS15
M10972_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_01
0.729 0.729
Q8VWZ2_MALDO
M11024_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS15_02
0.729 0.729
Q9FR84_MAIZE
M10981_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS3_03
0.729 0.729
Q84LI3_WHEAT
M10979_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAVRT1_01
0.729 0.729
O82128_WHEAT
M10965_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WAP1_01
0.729 0.729
Q41829_MAIZE
M10977_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ZAP1_02
0.729 0.729
AGL13
M06989_2.00
Arabidopsis thaliana
WTWCYHAAAAWRGWAADW

WHTTWCYWTTTTDRGWAW
Dap-seq
OMalley et al.(2016)
AGL13_col_b
0.708 0.708
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN

NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.708 0.708
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH

DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.708 0.708
AGL15
M10927_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.708 0.708
AGL15
M10928_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.708 0.708
FBP24_PETHY
M10997_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.708 0.708
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.708 0.708
O82698_MALDO
M11021_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS10_01
0.708 0.708
MAD55_ORYSJ
M10962_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS55_01
0.708 0.708
Q4U0F1_WHEAT
M10978_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TAVRT2_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna20134.1-v1.0-hybrid MADS box 61 108

Links

Other MADS box family TFs
Other Fragaria vesca TFs

1160 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R000828 Calypte anna Aan_R000828 I 0.000
Afo_R000910 Aptenodytes forsteri Afo_R000910 I 0.000
Brh_R007515 Buceros rhinoceros Brh_R007515 I 0.000
Cmyd_10007243 Chelonia mydas Cmyd_10007243 I 0.000
ZZZ3 Anolis carolinensis ENSACAG00000006005 I 0.000
ENSAMEG00000007243 Ailuropoda melanoleuca ENSAMEG00000007243 I 0.000
ENSAMXG00000019065 Astyanax mexicanus ENSAMXG00000019065 I 0.000
ENSAPLG00000007892 Anas platyrhynchos ENSAPLG00000007892 I 0.000
ZZZ3 Bos taurus ENSBTAG00000017419 I 0.000
ENSBTAP00000041453-D1 Bos grunniens ENSBTAP00000041453-D1 I 0.000
ZZZ3 Canis familiaris ENSCAFG00000020376 I 0.000
ZZZ3 Choloepus hoffmanni ENSCHOG00000007997 I 0.000
ZZZ3 Callithrix jacchus ENSCJAG00000006894 I 0.000
ENSCPOG00000003135 Cavia porcellus ENSCPOG00000003135 I 0.000
ENSCSAG00000001398 Chlorocebus sabaeus ENSCSAG00000001398 I 0.000
zzz3 Danio rerio ENSDARG00000077581 I 0.000
ENSDNOG00000000463 Dasypus novemcinctus ENSDNOG00000000463 I 0.000
Zzz3 Dipodomys ordii ENSDORG00000010114 I 0.000
ZZZ3 Equus caballus ENSECAG00000011430 I 0.000
ZZZ3 Echinops telfairi ENSETEG00000013187 I 0.000
ENSFALG00000005715 Ficedula albicollis ENSFALG00000005715 I 0.000
ZZZ3 Felis catus ENSFCAG00000001415 I 0.000
ZZZ3 Homo sapiens ENSG00000036549 D 0.000
zzz3 Gasterosteus aculeatus ENSGACG00000016546 I 0.000
ZZZ3 Gallus gallus ENSGALG00000008988 I 0.000
ZZZ3 Gorilla gorilla ENSGGOG00000009242 I 0.000
ENSGMOG00000003250 Gadus morhua ENSGMOG00000003250 I 0.000
ENSLACG00000009877 Latimeria chalumnae ENSLACG00000009877 I 0.000
ZZZ3 Loxodonta africana ENSLAFG00000011398 I 0.000
ENSLOCG00000003656 Lepisosteus oculatus ENSLOCG00000003656 I 0.000
ENSMEUG00000007391 Macropus eugenii ENSMEUG00000007391 I 0.000
ZZZ3 Meleagris gallopavo ENSMGAG00000009582 I 0.000
ZZZ3 Myotis lucifugus ENSMLUG00000006175 I 0.000
ENSMMUG00000020219 Macaca mulatta ENSMMUG00000020219 I 0.000
ENSMODG00000010136 Monodelphis domestica ENSMODG00000010136 I 0.000
ENSMODG00000010367 Monodelphis domestica ENSMODG00000010367 I 0.000
ENSMODG00000024557 Monodelphis domestica ENSMODG00000024557 I 0.000
ENSMPUG00000010824 Mustela putorius furo ENSMPUG00000010824 I 0.000
Zzz3 Mus musculus ENSMUSG00000039068 I 0.000
ENSNLEG00000009672 Nomascus leucogenys ENSNLEG00000009672 I 0.000
ZZZ3 Ornithorhynchus anatinus ENSOANG00000015757 I 0.000
ENSOARG00000013012 Ovis aries ENSOARG00000013012 I 0.000
ZZZ3 Oryctolagus cuniculus ENSOCUG00000002167 I 0.000
ZZZ3 Otolemur garnettii ENSOGAG00000014210 I 0.000
ENSONIG00000018369 Oreochromis niloticus ENSONIG00000018369 I 0.000
ZZZ3 Ochotona princeps ENSOPRG00000013036 I 0.000
zzz3 Oryzias latipes ENSORLG00000003342 I 0.000
ENSP00000359837 Macaca fascicularis ENSP00000359837 I 0.000
ENSPANG00000005101 Papio anubis ENSPANG00000005101 I 0.000
ZZZ3 Procavia capensis ENSPCAG00000016692 I 0.000
ENSPFOG00000000834 Poecilia formosa ENSPFOG00000000834 I 0.000
ENSPMAG00000000497 Petromyzon marinus ENSPMAG00000000497 I 0.000
ENSPPYG00000001223 Pongo abelii ENSPPYG00000001223 I 0.000
ENSPSIG00000011052 Pelodiscus sinensis ENSPSIG00000011052 I 0.000
ZZZ3 Pan troglodytes ENSPTRG00000000881 I 0.000
ZZZ3 Pteropus vampyrus ENSPVAG00000017539 I 0.000
Zzz3 Rattus norvegicus ENSRNOG00000050321 I 0.000
ZZZ3 Sorex araneus ENSSARG00000004268 I 0.000
ENSSHAG00000002082 Sarcophilus harrisii ENSSHAG00000002082 I 0.000
ZZZ3 Sus scrofa ENSSSCG00000003772 I 0.000
ENSSTOG00000016454 Ictidomys tridecemlineatus ENSSTOG00000016454 I 0.000
ZZZ3 Taeniopygia guttata ENSTGUG00000007000 I 0.000
ENSTNIG00000006386 Tetraodon nigroviridis ENSTNIG00000006386 I 0.000
zzz3 Takifugu rubripes ENSTRUG00000006240 I 0.000
ENSTSYG00000001826 Tarsius syrichta ENSTSYG00000001826 I 0.000
ZZZ3 Vicugna pacos ENSVPAG00000001421 I 0.000
ENSXMAG00000016350 Xiphophorus maculatus ENSXMAG00000016350 I 0.000
fgenesh2_pg.scaffold_163000011 Branchiostoma floridae fgenesh2_pg.scaffold_163000011 I 0.000
fgenesh2_pg.scaffold_163000017 Branchiostoma floridae fgenesh2_pg.scaffold_163000017 I 0.000
Gfo_R009151 Geospiza fortis Gfo_R009151 I 0.000
LotgiG187172 Lottia gigantea LotgiG187172 I 0.000
Myotis_brandtii_ZZZ3_10032449 Myotis brandtii Myotis_brandtii_ZZZ3_10032449 I 0.000
Ocbimv22013214m.g Octopus bimaculoides Ocbimv22013214m.g I 0.000
Ogr17321 Ophisaurus gracilis Ogr17321 I 0.000
Pvit_10393 Pogona vitticeps Pvit_10393 I 0.000
Sakowv30043886m.g Saccoglossus kowalevskii Sakowv30043886m.g I 0.000
zzz3 Xenopus tropicalis XB-GENE-993548 I 0.000
XP_002939691 Xenopus tropicalis XP_002939691 I 0.000