CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene26028-v1.0-hybrid
(
Fragaria vesca
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
gene26028-v1.0-hybrid
T258363_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.812
0.812
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna26028.1-v1.0-hybrid
MADS box
283
330
KLESSGNRQVTYSKRRNGILKKAKELSILCDVDITLLMFSPTGRPTLF
Links
Other
MADS box
family TFs
Other
Fragaria vesca
TFs
74 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000193129
Malus domestica
MDP0000193129
I
0.958
Pm024895
Prunus mume
Pm024895
I
0.957
PRUPE_ppa015857mg
Prunus persica
PRUPE_ppa015857mg
I
0.957
cassava19791.m1
Manihot esculenta
cassava19791.m1
I
0.875
cassava46162.m1
Manihot esculenta
cassava46162.m1
I
0.875
Lus10034464.g
Linum usitatissimum
Lus10034464.g
I
0.875
TCM_014051
Theobroma cacao
TCM_014051
I
0.875
30138.m004061
Ricinus communis
30138.m004061
I
0.854
Ciclev10020575m.g
Citrus clementina
Ciclev10020575m.g
I
0.854
orange1.1g017511m.g
Citrus sinensis
orange1.1g017511m.g
I
0.854
Lus10019089.g
Linum usitatissimum
Lus10019089.g
I
0.854
AGL65
Vitis vinifera
VIT_17s0000g06340
I
0.854
chr4.CM0087.920.nd
Lotus japonicus
chr4.CM0087.920.nd
I
0.851
Gorai.001G074200
Gossypium raimondii
Gorai.001G074200
I
0.833
Bo8g104060
Brassica oleracea
Bo8g104060
I
0.833
Gorai.008G194100
Gossypium raimondii
Gorai.008G194100
I
0.833
Thhalv10019839m.g
Eutrema salsugineum
Thhalv10019839m.g
I
0.833
PK21701.1
Cannabis sativa
PK21701.1
I
0.833
Bra016544
Brassica rapa
Bra016544
I
0.833
Bo8g068060
Brassica oleracea
Bo8g068060
I
0.833
Bra031049
Brassica rapa
Bra031049
I
0.833
Bra025685
Brassica rapa
Bra025685
I
0.830
MLOC_11474
Hordeum vulgare
MLOC_11474
I
0.826
MTR_4g108720
Medicago truncatula
MTR_4g108720
I
0.826
PDK_20s1342861g001
Phoenix dactylifera
PDK_20s1342861g001
I
0.826
AGL65
Arabidopsis thaliana
AT1G18750
D
0.812
Bostr.7128s0485
Boechera stricta
Bostr.7128s0485
I
0.812
Eucgr.B00522
Eucalyptus grandis
Eucgr.B00522
I
0.812
GLYMA17G10941
Glycine max
GLYMA17G10941
I
0.804
Traes_4DS_4C4EB1D21
Triticum aestivum
Traes_4DS_4C4EB1D21
I
0.804
TRIUR3_33223
Triticum urartu
TRIUR3_33223
I
0.804
Traes_4AL_8DBE120BC
Triticum aestivum
Traes_4AL_8DBE120BC
I
0.804
Traes_4BS_8B4AFA7C2
Triticum aestivum
Traes_4BS_8B4AFA7C2
I
0.804
Sb05g025970
Sorghum bicolor
Sb05g025970
I
0.804
AMTR_s00010p00264750
Amborella trichopoda
AMTR_s00010p00264750
I
0.804
F775_13266
Aegilops tauschii
F775_13266
I
0.804
Thhalv10007954m.g
Eutrema salsugineum
Thhalv10007954m.g
I
0.792
AGL65
Arabidopsis lyrata
fgenesh2_kg.1__2055__AT1G18750.1
I
0.792
Pavir.J04162
Panicum virgatum
Pavir.J04162
I
0.787
PDK_20s1352301g001
Phoenix dactylifera
PDK_20s1352301g001
I
0.787
Pavir.Hb00170
Panicum virgatum
Pavir.Hb00170
I
0.787
Aquca_002_00641
Aquilegia coerulea
Aquca_002_00641
I
0.783
BRADI4G11097
Brachypodium distachyon
BRADI4G11097
I
0.783
Cucsa.112840
Cucumis sativus
Cucsa.112840
I
0.771
Cla018884
Citrullus lanatus
Cla018884
I
0.771
OLONG_008007
Oryza longistaminata
OLONG_008007
N
0.761
OGLUM11G21110
Oryza glumaepatula
OGLUM11G21110
N
0.761
OMERI11G18020
Oryza meridionalis
OMERI11G18020
N
0.761
Cucsa.284960
Cucumis sativus
Cucsa.284960
I
0.761
Si028357m.g
Setaria italica
Si028357m.g
N
0.761
LPERR11G18320
Leersia perrieri
LPERR11G18320
N
0.761
Cagra.4153s0004
Capsella grandiflora
Cagra.4153s0004
I
0.750
OPUNC11G18320
Oryza punctata
OPUNC11G18320
N
0.750
Carubv10009419m.g
Capsella rubella
Carubv10009419m.g
I
0.750
ORUFI11G23650
Oryza rufipogon
ORUFI11G23650
N
0.739
OS11G0658700
Oryza sativa
OS11G0658700
N
0.739
OBART11G21780
Oryza barthii
OBART11G21780
N
0.739
Cla010361
Citrullus lanatus
Cla010361
I
0.739
GRMZM2G441115
Zea mays
GRMZM2G441115
I
0.739
ORGLA11G0175900
Oryza glaberrima
ORGLA11G0175900
N
0.739
Solyc03g115910.1
Solanum lycopersicum
Solyc03g115910.1
I
0.729
SapurV1A.0149s0010
Salix purpurea
SapurV1A.0149s0010
N
0.717
BGIOSGA035654
Oryza indica
BGIOSGA035654
N
0.717
Thhalv10019726m.g
Eutrema salsugineum
Thhalv10019726m.g
I
0.717
29813.m001508
Ricinus communis
29813.m001508
I
0.717
MDP0000146415
Malus domestica
MDP0000146415
I
0.711
MDP0000919323
Malus domestica
MDP0000919323
I
0.711
MDP0000773068
Malus domestica
MDP0000773068
I
0.711
GSMUA_Achr3G24170_001
Musa acuminata
GSMUA_Achr3G24170_001
I
0.708
mgf000945m
Mimulus guttatus
mgf000945m
I
0.708
AMTR_s00010p00214260
Amborella trichopoda
AMTR_s00010p00214260
I
0.708
Ca_01572
Cicer arietinum
Ca_01572
I
0.708
mgf004425m
Mimulus guttatus
mgf004425m
I
0.708
MTR_3g102570
Medicago truncatula
MTR_3g102570
I
0.708