gene26028-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene26028-v1.0-hybrid T258363_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna26028.1-v1.0-hybrid MADS box 283 330

Links

Other MADS box family TFs
Other Fragaria vesca TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29813.m001508 Ricinus communis 29813.m001508 I 0.717
30138.m004061 Ricinus communis 30138.m004061 I 0.854
AGL65 Arabidopsis thaliana AT1G18750 D 0.812
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.792
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.854
AMTR_s00010p00214260 Amborella trichopoda AMTR_s00010p00214260 I 0.708
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.804
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.783
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.717
Bo8g068060 Brassica oleracea Bo8g068060 I 0.833
Bo8g104060 Brassica oleracea Bo8g104060 I 0.833
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.812
Bra016544 Brassica rapa Bra016544 I 0.833
Bra025685 Brassica rapa Bra025685 I 0.830
Bra031049 Brassica rapa Bra031049 I 0.833
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.783
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.750
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.750
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.875
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.875
Ca_01572 Cicer arietinum Ca_01572 I 0.708
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.851
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.854
Cla010361 Citrullus lanatus Cla010361 I 0.739
Cla018884 Citrullus lanatus Cla018884 I 0.771
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.771
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.761
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.812
F775_13266 Aegilops tauschii F775_13266 I 0.804
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.804
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.833
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.833
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.739
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.708
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.761
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.854
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.875
MDP0000146415 Malus domestica MDP0000146415 I 0.711
MDP0000193129 Malus domestica MDP0000193129 I 0.958
MDP0000773068 Malus domestica MDP0000773068 I 0.711
MDP0000919323 Malus domestica MDP0000919323 I 0.711
mgf000945m Mimulus guttatus mgf000945m I 0.708
mgf004425m Mimulus guttatus mgf004425m I 0.708
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.826
MTR_3g102570 Medicago truncatula MTR_3g102570 I 0.708
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.826
OBART11G21780 Oryza barthii OBART11G21780 N 0.739
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.761
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.761
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.761
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.750
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.854
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.739
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.739
OS11G0658700 Oryza sativa OS11G0658700 N 0.739
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.787
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.787
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.826
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.787
PK21701.1 Cannabis sativa PK21701.1 I 0.833
Pm024895 Prunus mume Pm024895 I 0.957
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.957
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.717
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.804
Si028357m.g Setaria italica Si028357m.g N 0.761
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.729
TCM_014051 Theobroma cacao TCM_014051 I 0.875
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.792
Thhalv10019726m.g Eutrema salsugineum Thhalv10019726m.g I 0.717
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.833
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.804
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.804
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.804
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.804