gene27105-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene27105-v1.0-hybrid T258367_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL12
M10906_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.851 0.851
MADS26
M10974_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
0.787 0.787
FBP24_PETHY
M10997_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.745 0.745
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.702 0.702
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.702 0.702
AGL3
M02693_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN

NNWNCYWWWWWTGGNWHB
SELEX
Mathelier et al.(2014)
MA0001.2
0.702 0.702
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.702 0.702
AGL3
M10908_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN

NNWNCYWWWWWTGGNWHB
Transfac
Matys et al.(2006)
P$AGL3_01
0.702 0.702
AGL3
M10909_2.00
Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN

NNWDCYAWWWWTGGNAHN
Transfac
Matys et al.(2006)
P$AGL3_02
0.702 0.702
AGL3
M10910_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL3_03
0.702 0.702
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.702 0.702
O82699_MALDO
M11022_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna27105.1-v1.0-hybrid MADS box 10 56

Links

Other MADS box family TFs
Other Fragaria vesca TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29907.m000663 Ricinus communis 29907.m000663 I 0.809
AGL12 Arabidopsis lyrata fgenesh2_kg.2__1419__AT1G71692.1 I 0.851
AGL12 Vitis vinifera VIT_18s0041g02140 I 0.833
AGL12 Arabidopsis thaliana AT1G71692 D 0.851
AGL15 Vitis vinifera VIT_13s0158g00100 I 0.702
AGL18 Vitis vinifera VIT_08s0007g08790 I 0.771
AMTR_s00001p00270400 Amborella trichopoda AMTR_s00001p00270400 I 0.702
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.708
AMTR_s00071p00198970 Amborella trichopoda AMTR_s00071p00198970 I 0.830
Aquca_014_00077 Aquilegia coerulea Aquca_014_00077 I 0.787
Aquca_022_00241 Aquilegia coerulea Aquca_022_00241 I 0.708
BGIOSGA015021 Oryza indica BGIOSGA015021 I 0.830
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.900
BGIOSGA027872 Oryza indica BGIOSGA027872 I 0.787
Bo2g073010 Brassica oleracea Bo2g073010 I 0.851
Bo6g094120 Brassica oleracea Bo6g094120 I 0.830
Bo6g113110 Brassica oleracea Bo6g113110 I 0.851
Bo8g101000 Brassica oleracea Bo8g101000 I 0.702
Bostr.10273s0193 Boechera stricta Bostr.10273s0193 I 0.830
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.702
Bra003919 Brassica rapa Bra003919 I 0.830
Bra007972 Brassica rapa Bra007972 I 0.851
Bra016128 Brassica rapa Bra016128 I 0.851
Bra038511 Brassica rapa Bra038511 I 0.702
BRADI2G57000 Brachypodium distachyon BRADI2G57000 I 0.708
BRADI3G13570 Brachypodium distachyon BRADI3G13570 I 0.809
BRADI4G40357 Brachypodium distachyon BRADI4G40357 I 0.766
BRADI4G40940 Brachypodium distachyon BRADI4G40940 I 0.766
BRADI5G11270 Brachypodium distachyon BRADI5G11270 I 0.809
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.702
Cagra.2418s0012 Capsella grandiflora Cagra.2418s0012 I 0.851
Carubv10020947m.g Capsella rubella Carubv10020947m.g I 0.851
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.702
cassava21127.m1 Manihot esculenta cassava21127.m1 I 0.833
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.702
cassava6262.valid.m1 Manihot esculenta cassava6262.valid.m1 I 0.830
Ca_06280 Cicer arietinum Ca_06280 I 0.702
Ca_19954 Cicer arietinum Ca_19954 I 0.833
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.750
Ciclev10023354m.g Citrus clementina Ciclev10023354m.g I 0.854
Ciclev10032489m.g Citrus clementina Ciclev10032489m.g I 0.708
Cla006333 Citrullus lanatus Cla006333 I 0.708
Cla012709 Citrullus lanatus Cla012709 I 0.833
Cla014322 Citrullus lanatus Cla014322 I 0.702
Cucsa.061750 Cucumis sativus Cucsa.061750 I 0.833
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.702
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.729
Eucgr.F02956 Eucalyptus grandis Eucgr.F02956 I 0.854
evm.TU.supercontig_125.55 Carica papaya evm.TU.supercontig_125.55 I 0.723
evm.TU.supercontig_21.50 Carica papaya evm.TU.supercontig_21.50 I 0.896
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.723
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.723
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.702
F775_05799 Aegilops tauschii F775_05799 I 0.812
F775_26271 Aegilops tauschii F775_26271 I 0.830
FBP24_PETHY Petunia x hybrida FBP24_PETHY D 0.745
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.702
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.729
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.702
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.729
GLYMA09G36590 Glycine max GLYMA09G36590 I 0.833
GLYMA09G42061 Glycine max GLYMA09G42061 I 0.702
GLYMA12G00770 Glycine max GLYMA12G00770 I 0.833
Gorai.013G135200 Gossypium raimondii Gorai.013G135200 I 0.854
GRMZM2G069370 Zea mays GRMZM2G069370 I 0.766
GRMZM2G105387 Zea mays GRMZM2G105387 I 0.745
GRMZM2G117961 Zea mays GRMZM2G117961 I 0.766
GSMUA_Achr11G19350_001 Musa acuminata GSMUA_Achr11G19350_001 I 0.851
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.729
GSMUA_Achr2G04350_001 Musa acuminata GSMUA_Achr2G04350_001 I 0.708
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.708
GSMUA_Achr7G02960_001 Musa acuminata GSMUA_Achr7G02960_001 I 0.787
LPERR04G10680 Leersia perrieri LPERR04G10680 I 0.812
LPERR08G01250 Leersia perrieri LPERR08G01250 I 0.830
Lus10001277.g Linum usitatissimum Lus10001277.g I 0.872
Lus10009472.g Linum usitatissimum Lus10009472.g I 0.872
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.702
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.702
MADS26 Oryza sativa OS08G0112700 D 0.787
MDP0000135652 Malus domestica MDP0000135652 I 0.708
MDP0000144516 Malus domestica MDP0000144516 I 0.708
MDP0000179718 Malus domestica MDP0000179718 I 0.727
MDP0000192806 Malus domestica MDP0000192806 I 0.875
MDP0000193953 Malus domestica MDP0000193953 I 0.875
MDP0000209705 Malus domestica MDP0000209705 I 0.723
MDP0000233948 Malus domestica MDP0000233948 I 0.729
MDP0000316609 Malus domestica MDP0000316609 I 0.894
mgf017448m Mimulus guttatus mgf017448m I 0.833
mgf023192m Mimulus guttatus mgf023192m I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.708
MLOC_53973 Hordeum vulgare MLOC_53973 I 0.830
MTR_1g053070 Medicago truncatula MTR_1g053070 I 0.729
MTR_4g036050 Medicago truncatula MTR_4g036050 I 0.833
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.708
MTR_7g075850 Medicago truncatula MTR_7g075850 I 0.702
OB04G21020 Oryza brachyantha OB04G21020 I 0.830
OB08G11080 Oryza brachyantha OB08G11080 I 0.830
OBART04G13770 Oryza barthii OBART04G13770 I 0.812
OBART04G13800 Oryza barthii OBART04G13800 I 0.812
OBART08G00930 Oryza barthii OBART08G00930 I 0.787
OGLUM04G13520 Oryza glumaepatula OGLUM04G13520 I 0.812
OGLUM04G13550 Oryza glumaepatula OGLUM04G13550 I 0.812
OGLUM08G00990 Oryza glumaepatula OGLUM08G00990 I 0.787
OLONG_011815 Oryza longistaminata OLONG_011815 I 0.787
OLONG_023630 Oryza longistaminata OLONG_023630 I 0.812
OLONG_023633 Oryza longistaminata OLONG_023633 I 0.895
OMERI04G12400 Oryza meridionalis OMERI04G12400 I 0.812
OMERI04G12420 Oryza meridionalis OMERI04G12420 I 0.792
ONIVA04G11980 Oryza nivara ONIVA04G11980 I 0.867
ONIVA04G12010 Oryza nivara ONIVA04G12010 I 0.812
ONIVA08G00920 Oryza nivara ONIVA08G00920 I 0.787
OPUNC04G11660 Oryza punctata OPUNC04G11660 I 0.792
OPUNC08G01030 Oryza punctata OPUNC08G01030 I 0.830
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.758
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.702
orange1.1g028961m.g Citrus sinensis orange1.1g028961m.g I 0.833
orange1.1g036652m.g Citrus sinensis orange1.1g036652m.g I 0.708
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.750
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.702
ORGLA08G0003200 Oryza glaberrima ORGLA08G0003200 I 0.787
ORUFI04G15040 Oryza rufipogon ORUFI04G15040 I 0.812
ORUFI04G15060 Oryza rufipogon ORUFI04G15060 I 0.812
ORUFI08G00950 Oryza rufipogon ORUFI08G00950 I 0.787
Pavir.Ca00337 Panicum virgatum Pavir.Ca00337 I 0.723
Pavir.Db00414 Panicum virgatum Pavir.Db00414 I 0.708
Pavir.Ga01731 Panicum virgatum Pavir.Ga01731 I 0.787
Pavir.Gb01604 Panicum virgatum Pavir.Gb01604 I 0.809
Pavir.J09556 Panicum virgatum Pavir.J09556 I 0.708
Pavir.J10823 Panicum virgatum Pavir.J10823 I 0.723
Pavir.J40795 Panicum virgatum Pavir.J40795 I 0.809
PDK_20s1302432g001 Phoenix dactylifera PDK_20s1302432g001 I 0.830
PDK_20s1439001g001 Phoenix dactylifera PDK_20s1439001g001 I 0.812
PGSC0003DMG400028359 Solanum tuberosum PGSC0003DMG400028359 I 0.702
PGSC0003DMG401006771 Solanum tuberosum PGSC0003DMG401006771 I 0.723
PGSC0003DMG401018787 Solanum tuberosum PGSC0003DMG401018787 I 0.833
PK20651.1 Cannabis sativa PK20651.1 I 0.723
PK26896.1 Cannabis sativa PK26896.1 I 0.830
Pm002166 Prunus mume Pm002166 I 0.708
Pm004239 Prunus mume Pm004239 I 0.957
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.702
POPTR_0013s10190 Populus trichocarpa POPTR_0013s10190 I 0.812
POPTR_0019s10540 Populus trichocarpa POPTR_0019s10540 I 0.833
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.708
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.957
SapurV1A.0400s0280 Salix purpurea SapurV1A.0400s0280 I 0.702
SapurV1A.0675s0070 Salix purpurea SapurV1A.0675s0070 I 0.812
SapurV1A.0881s0020 Salix purpurea SapurV1A.0881s0020 I 0.702
SapurV1A.0945s0060 Salix purpurea SapurV1A.0945s0060 I 0.833
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.702
SapurV1A.3049s0010 Salix purpurea SapurV1A.3049s0010 I 0.833
Sb06g017660 Sorghum bicolor Sb06g017660 I 0.809
Sb07g001250 Sorghum bicolor Sb07g001250 I 0.809
Sb08g006430 Sorghum bicolor Sb08g006430 I 0.745
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.708
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.708
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.702
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.702
Si012632m.g Setaria italica Si012632m.g I 0.809
Si014419m.g Setaria italica Si014419m.g I 0.809
Si024640m.g Setaria italica Si024640m.g I 0.723
Solyc01g087990.2 Solanum lycopersicum Solyc01g087990.2 I 0.723
Solyc11g005120.1 Solanum lycopersicum Solyc11g005120.1 I 0.708
Solyc11g032100.1 Solanum lycopersicum Solyc11g032100.1 I 0.833
SVP Arabidopsis thaliana AT2G22540 D 0.702
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.702
SVP Vitis vinifera VIT_00s0313g00070 I 0.702
TCM_036568 Theobroma cacao TCM_036568 I 0.833
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.702
Thhalv10019132m.g Eutrema salsugineum Thhalv10019132m.g I 0.830
Traes_2BL_E0978B1BC Triticum aestivum Traes_2BL_E0978B1BC I 0.812
Traes_2DL_71F120931 Triticum aestivum Traes_2DL_71F120931 I 0.812
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
Traes_7AL_67921A952 Triticum aestivum Traes_7AL_67921A952 I 0.830
Traes_7BL_9BCF391CF Triticum aestivum Traes_7BL_9BCF391CF I 0.830
Traes_7DL_CAF83263E Triticum aestivum Traes_7DL_CAF83263E I 0.830
TRIUR3_02252 Triticum urartu TRIUR3_02252 I 0.812
TRIUR3_13653 Triticum urartu TRIUR3_13653 I 0.830
TT16 Vitis vinifera VIT_01s0011g01560 I 0.702