gene27105-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene27105-v1.0-hybrid T258367_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL12
M10906_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL12_01
0.851 0.851
MADS26
M10974_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS26_01
0.787 0.787
FBP24_PETHY
M10997_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.745 0.745
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA

TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.702 0.702
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW

WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.702 0.702
AGL3
M02693_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN

NNWNCYWWWWWTGGNWHB
SELEX
Mathelier et al.(2014)
MA0001.2
0.702 0.702
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH

DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.702 0.702
AGL3
M10908_2.00
Arabidopsis thaliana
VDWNCCAWWWWWRGNWNN

NNWNCYWWWWWTGGNWHB
Transfac
Matys et al.(2006)
P$AGL3_01
0.702 0.702
AGL3
M10909_2.00
Arabidopsis thaliana
NDTNCCAWWWWTRGHWNN

NNWDCYAWWWWTGGNAHN
Transfac
Matys et al.(2006)
P$AGL3_02
0.702 0.702
AGL3
M10910_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL3_03
0.702 0.702
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.702 0.702
O82699_MALDO
M11022_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS11_01
0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna27105.1-v1.0-hybrid MADS box 10 56

Links

Other MADS box family TFs
Other Fragaria vesca TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CPUR_05751 Claviceps purpurea CPUR_05751 N 0.000
CFIO01_06042 Colletotrichum fioriniae CFIO01_06042 N 0.000
Cob_01855 Colletotrichum orbiculare Cob_01855 N 0.000
CSUB01_08938 Colletotrichum sublineola CSUB01_08938 N 0.000
MAM_00634 Metarhizium album MAM_00634 N 0.000
MANI_025103 Metarhizium anisopliae MANI_025103 N 0.000
MBR_02646 Metarhizium brunneum MBR_02646 N 0.000
MGU_00367 Metarhizium guizhouense MGU_00367 N 0.000
MAJ_02549 Metarhizium majus MAJ_02549 N 0.000
X797_000692 Metarhizium robertsii X797_000692 N 0.000
TRIATDRAFT_293141 Trichoderma atroviride TRIATDRAFT_293141 N 0.000
TRIREDRAFT_121602 Trichoderma reesei TRIREDRAFT_121602 N 0.000
TRIVIDRAFT_124963 Trichoderma virens TRIVIDRAFT_124963 N 0.000
VDAG_03900 Verticillium dahliae VDAG_03900 N 0.000