CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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gene30567-v1.0-hybrid
(
Fragaria vesca
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
gene30567-v1.0-hybrid
T258373_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.750
0.750
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna30567.1-v1.0-hybrid
MADS box
10
57
RVMDNNSRQVTFSKRRTGLFKKAHEIATLCGAEVAIVVFSPGGKPFSF
Links
Other
MADS box
family TFs
Other
Fragaria vesca
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gene14058-v1.0-hybrid
Fragaria vesca
gene14058-v1.0-hybrid
I
0.917
TCM_029518
Theobroma cacao
TCM_029518
I
0.854
29693.m002039
Ricinus communis
29693.m002039
I
0.812
cassava10519.m1
Manihot esculenta
cassava10519.m1
I
0.812
MDP0000274606
Malus domestica
MDP0000274606
N
0.812
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
0.812
orange1.1g037442m.g
Citrus sinensis
orange1.1g037442m.g
I
0.812
AGL29
Arabidopsis thaliana
AT2G34440
I
0.792
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.792
POPTR_0004s13600
Populus trichocarpa
POPTR_0004s13600
N
0.792
Ca_05023
Cicer arietinum
Ca_05023
I
0.792
Pm030655
Prunus mume
Pm030655
I
0.792
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
0.792
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.792
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
0.792
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.792
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
0.792
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.792
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
0.792
Lus10040832.g
Linum usitatissimum
Lus10040832.g
N
0.771
LjSGA_017605.1
Lotus japonicus
LjSGA_017605.1
I
0.771
Thhalv10017825m.g
Eutrema salsugineum
Thhalv10017825m.g
I
0.771
Cla019897
Citrullus lanatus
Cla019897
N
0.771
SapurV1A.0560s0040
Salix purpurea
SapurV1A.0560s0040
N
0.771
SapurV1A.2238s0010
Salix purpurea
SapurV1A.2238s0010
N
0.771
Cucsa.212320
Cucumis sativus
Cucsa.212320
N
0.771
Bo4g182590
Brassica oleracea
Bo4g182590
I
0.771
Bra021910
Brassica rapa
Bra021910
I
0.771
MTR_1g054265
Medicago truncatula
MTR_1g054265
I
0.771
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.771
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.771
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.750
MDP0000120467
Malus domestica
MDP0000120467
N
0.750
Ca_24185
Cicer arietinum
Ca_24185
I
0.750
Lus10016563.g
Linum usitatissimum
Lus10016563.g
N
0.750
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.750
MTR_1g063160
Medicago truncatula
MTR_1g063160
I
0.750
Thhalv10022154m.g
Eutrema salsugineum
Thhalv10022154m.g
I
0.750
AGL91
Arabidopsis thaliana
AT3G66656
D
0.750
Carubv10014761m.g
Capsella rubella
Carubv10014761m.g
I
0.750
AGL91
Arabidopsis lyrata
fgenesh2_kg.3__679__AT3G66656.1
I
0.750
Cagra.0133s0015
Capsella grandiflora
Cagra.0133s0015
I
0.750
Lus10011787.g
Linum usitatissimum
Lus10011787.g
N
0.729
chr4.LjT16L01.50.nd
Lotus japonicus
chr4.LjT16L01.50.nd
I
0.729
GLYMA05G35820
Glycine max
GLYMA05G35820
I
0.729
GLYMA18G20830
Glycine max
GLYMA18G20830
I
0.729
MTR_4g131030
Medicago truncatula
MTR_4g131030
I
0.729
Bostr.22252s0371
Boechera stricta
Bostr.22252s0371
I
0.729
Eucgr.D00311
Eucalyptus grandis
Eucgr.D00311
N
0.729
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.729
Eucgr.D00312
Eucalyptus grandis
Eucgr.D00312
N
0.729
Eucgr.D00313
Eucalyptus grandis
Eucgr.D00313
N
0.729
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.711
chr5.LjT39E05.40.nd
Lotus japonicus
chr5.LjT39E05.40.nd
N
0.708
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.708
AGL62
Arabidopsis thaliana
AT5G60440
I
0.708
GLYMA08G03820
Glycine max
GLYMA08G03820
I
0.708
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.707
PGSC0003DMG400045423
Solanum tuberosum
PGSC0003DMG400045423
N
0.700