CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene30567-v1.0-hybrid
(
Fragaria vesca
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
gene30567-v1.0-hybrid
T258373_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.750
0.750
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna30567.1-v1.0-hybrid
MADS box
10
57
RVMDNNSRQVTFSKRRTGLFKKAHEIATLCGAEVAIVVFSPGGKPFSF
Links
Other
MADS box
family TFs
Other
Fragaria vesca
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29693.m002039
Ricinus communis
29693.m002039
I
0.812
Aquca_041_00050
Aquilegia coerulea
Aquca_041_00050
N
0.708
Aquca_054_00126
Aquilegia coerulea
Aquca_054_00126
N
0.729
AGL29
Arabidopsis thaliana
AT2G34440
I
0.792
AGL91
Arabidopsis thaliana
AT3G66656
D
0.750
AGL62
Arabidopsis thaliana
AT5G60440
I
0.708
Bo4g182590
Brassica oleracea
Bo4g182590
I
0.771
Bostr.22252s0371
Boechera stricta
Bostr.22252s0371
I
0.729
Bostr.23794s0666
Boechera stricta
Bostr.23794s0666
I
0.792
Bra021910
Brassica rapa
Bra021910
I
0.771
Cagra.0133s0015
Capsella grandiflora
Cagra.0133s0015
I
0.750
Cagra.7352s0007
Capsella grandiflora
Cagra.7352s0007
I
0.792
Carubv10014761m.g
Capsella rubella
Carubv10014761m.g
I
0.750
Carubv10025656m.g
Capsella rubella
Carubv10025656m.g
I
0.792
cassava10519.m1
Manihot esculenta
cassava10519.m1
I
0.812
Ca_05023
Cicer arietinum
Ca_05023
I
0.792
Ca_24185
Cicer arietinum
Ca_24185
I
0.750
chr4.LjT16L01.50.nd
Lotus japonicus
chr4.LjT16L01.50.nd
I
0.729
chr5.LjT39E05.40.nd
Lotus japonicus
chr5.LjT39E05.40.nd
N
0.708
Ciclev10017472m.g
Citrus clementina
Ciclev10017472m.g
I
0.812
Cla019897
Citrullus lanatus
Cla019897
N
0.771
Cucsa.212320
Cucumis sativus
Cucsa.212320
N
0.771
Eucgr.D00311
Eucalyptus grandis
Eucgr.D00311
N
0.729
Eucgr.D00312
Eucalyptus grandis
Eucgr.D00312
N
0.729
Eucgr.D00313
Eucalyptus grandis
Eucgr.D00313
N
0.729
evm.TU.supercontig_25.93
Carica papaya
evm.TU.supercontig_25.93
I
0.792
AGL91
Arabidopsis lyrata
fgenesh2_kg.3__679__AT3G66656.1
I
0.750
AGL29
Arabidopsis lyrata
fgenesh2_kg.4__1464__AT2G34440.1
I
0.792
gene14058-v1.0-hybrid
Fragaria vesca
gene14058-v1.0-hybrid
I
0.917
GLYMA05G35811
Glycine max
GLYMA05G35811
I
0.750
GLYMA05G35820
Glycine max
GLYMA05G35820
I
0.729
GLYMA08G03820
Glycine max
GLYMA08G03820
I
0.708
GLYMA08G03830
Glycine max
GLYMA08G03830
I
0.750
GLYMA18G20830
Glycine max
GLYMA18G20830
I
0.729
Gorai.010G165500
Gossypium raimondii
Gorai.010G165500
I
0.792
LjSGA_017605.1
Lotus japonicus
LjSGA_017605.1
I
0.771
Lus10011787.g
Linum usitatissimum
Lus10011787.g
N
0.729
Lus10016563.g
Linum usitatissimum
Lus10016563.g
N
0.750
Lus10040832.g
Linum usitatissimum
Lus10040832.g
N
0.771
MDP0000120467
Malus domestica
MDP0000120467
N
0.750
MDP0000274606
Malus domestica
MDP0000274606
N
0.812
MTR_1g047550
Medicago truncatula
MTR_1g047550
I
0.771
MTR_1g054265
Medicago truncatula
MTR_1g054265
I
0.771
MTR_1g063160
Medicago truncatula
MTR_1g063160
I
0.750
MTR_4g131030
Medicago truncatula
MTR_4g131030
I
0.729
MTR_8g051580
Medicago truncatula
MTR_8g051580
I
0.792
MTR_8g079502
Medicago truncatula
MTR_8g079502
I
0.771
orange1.1g037442m.g
Citrus sinensis
orange1.1g037442m.g
I
0.812
PGSC0003DMG400045423
Solanum tuberosum
PGSC0003DMG400045423
N
0.700
Pm030655
Prunus mume
Pm030655
I
0.792
POPTR_0004s13600
Populus trichocarpa
POPTR_0004s13600
N
0.792
PRUPE_ppa024816mg
Prunus persica
PRUPE_ppa024816mg
I
0.792
SapurV1A.0560s0040
Salix purpurea
SapurV1A.0560s0040
N
0.771
SapurV1A.2238s0010
Salix purpurea
SapurV1A.2238s0010
N
0.771
TCM_029518
Theobroma cacao
TCM_029518
I
0.854
Thhalv10012100m.g
Eutrema salsugineum
Thhalv10012100m.g
I
0.711
Thhalv10017825m.g
Eutrema salsugineum
Thhalv10017825m.g
I
0.771
Thhalv10022154m.g
Eutrema salsugineum
Thhalv10022154m.g
I
0.750
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.707