gene30567-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene30567-v1.0-hybrid T258373_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL91
M10922_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G66656_01
0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna30567.1-v1.0-hybrid MADS box 10 57

Links

Other MADS box family TFs
Other Fragaria vesca TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL91 Arabidopsis thaliana AT3G66656 D 0.750
chr4.LjT16L01.50.nd Lotus japonicus chr4.LjT16L01.50.nd I 0.729
Cagra.0133s0015 Capsella grandiflora Cagra.0133s0015 I 0.750
Bostr.23794s0666 Boechera stricta Bostr.23794s0666 I 0.792
Bostr.22252s0371 Boechera stricta Bostr.22252s0371 I 0.729
Carubv10014761m.g Capsella rubella Carubv10014761m.g I 0.750
cassava10519.m1 Manihot esculenta cassava10519.m1 I 0.812
29693.m002039 Ricinus communis 29693.m002039 I 0.812
Pm030655 Prunus mume Pm030655 I 0.792
Ca_24185 Cicer arietinum Ca_24185 I 0.750
Cagra.7352s0007 Capsella grandiflora Cagra.7352s0007 I 0.792
Carubv10025656m.g Capsella rubella Carubv10025656m.g I 0.792
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I 0.812
Thhalv10022154m.g Eutrema salsugineum Thhalv10022154m.g I 0.750
Thhalv10017825m.g Eutrema salsugineum Thhalv10017825m.g I 0.771
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I 0.771
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I 0.812
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.792
gene14058-v1.0-hybrid Fragaria vesca gene14058-v1.0-hybrid I 0.917
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I 0.792
Ca_05023 Cicer arietinum Ca_05023 I 0.792
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.707
TCM_029518 Theobroma cacao TCM_029518 I 0.854
MTR_1g047550 Medicago truncatula MTR_1g047550 I 0.771
GLYMA18G20830 Glycine max GLYMA18G20830 I 0.729
GLYMA08G03830 Glycine max GLYMA08G03830 I 0.750
AGL91 Arabidopsis lyrata fgenesh2_kg.3__679__AT3G66656.1 I 0.750
AGL29 Arabidopsis lyrata fgenesh2_kg.4__1464__AT2G34440.1 I 0.792
GLYMA08G03820 Glycine max GLYMA08G03820 I 0.708
GLYMA05G35820 Glycine max GLYMA05G35820 I 0.729
GLYMA05G35811 Glycine max GLYMA05G35811 I 0.750
MTR_1g054265 Medicago truncatula MTR_1g054265 I 0.771
MTR_1g063160 Medicago truncatula MTR_1g063160 I 0.750
MTR_4g131030 Medicago truncatula MTR_4g131030 I 0.729
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.792
AGL29 Arabidopsis thaliana AT2G34440 I 0.792
AGL62 Arabidopsis thaliana AT5G60440 I 0.708
MTR_8g079502 Medicago truncatula MTR_8g079502 I 0.771
MTR_8g051580 Medicago truncatula MTR_8g051580 I 0.792
Bo4g182590 Brassica oleracea Bo4g182590 I 0.771
Bra021910 Brassica rapa Bra021910 I 0.771
MDP0000274606 Malus domestica MDP0000274606 N 0.812
SapurV1A.2238s0010 Salix purpurea SapurV1A.2238s0010 N 0.771
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.708
MDP0000120467 Malus domestica MDP0000120467 N 0.750
Lus10040832.g Linum usitatissimum Lus10040832.g N 0.771
Lus10016563.g Linum usitatissimum Lus10016563.g N 0.750
Cla019897 Citrullus lanatus Cla019897 N 0.771
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N 0.792
PGSC0003DMG400045423 Solanum tuberosum PGSC0003DMG400045423 N 0.700
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.729
Cucsa.212320 Cucumis sativus Cucsa.212320 N 0.771
Eucgr.D00311 Eucalyptus grandis Eucgr.D00311 N 0.729
Eucgr.D00312 Eucalyptus grandis Eucgr.D00312 N 0.729
Eucgr.D00313 Eucalyptus grandis Eucgr.D00313 N 0.729
Lus10011787.g Linum usitatissimum Lus10011787.g N 0.729
SapurV1A.0560s0040 Salix purpurea SapurV1A.0560s0040 N 0.771