Gorai.001G074200 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.001G074200 T258379_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.786 0.786
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.001G074200.1 MADS box 10 57
Gorai.001G074200.2 MADS box 17 44
Gorai.001G074200.3 MADS box 10 57
Gorai.001G074200.4 MADS box 17 44

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

91 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 1.000
30138.m004061 Ricinus communis 30138.m004061 I 0.938
TCM_014051 Theobroma cacao TCM_014051 I 0.938
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.896
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.875
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.875
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.875
PK21701.1 Cannabis sativa PK21701.1 I 0.875
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.875
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.870
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.857
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.857
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.854
Bra016544 Brassica rapa Bra016544 I 0.854
Bo8g104060 Brassica oleracea Bo8g104060 I 0.854
Bo8g068060 Brassica oleracea Bo8g068060 I 0.854
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.854
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.854
Bra031049 Brassica rapa Bra031049 I 0.854
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.854
Bra025685 Brassica rapa Bra025685 I 0.833
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.833
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.833
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.833
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.821
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.821
Cla010361 Citrullus lanatus Cla010361 I 0.821
AGL65 Arabidopsis thaliana AT1G18750 D 0.812
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.812
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.812
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.812
MDP0000193129 Malus domestica MDP0000193129 I 0.812
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.812
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.812
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.804
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.804
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.804
F775_13266 Aegilops tauschii F775_13266 I 0.804
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.804
mgf004425m Mimulus guttatus mgf004425m I 0.792
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.792
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.792
mgf000945m Mimulus guttatus mgf000945m I 0.792
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.792
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.792
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.786
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.786
PK03147.1 Cannabis sativa PK03147.1 I 0.786
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.786
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.786
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.786
MDP0000146231 Malus domestica MDP0000146231 I 0.786
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.786
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.786
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.771
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.771
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.771
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.771
Si028357m.g Setaria italica Si028357m.g N 0.771
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.771
Pm024895 Prunus mume Pm024895 I 0.771
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.771
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.771
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.761
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.761
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.761
Ca_18082 Cicer arietinum Ca_18082 I 0.750
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.750
MDP0000147667 Malus domestica MDP0000147667 I 0.750
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.750
OBART11G21780 Oryza barthii OBART11G21780 N 0.750
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.750
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.750
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.750
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.750
OS11G0658700 Oryza sativa OS11G0658700 N 0.750
PGSC0003DMG400019525 Solanum tuberosum PGSC0003DMG400019525 N 0.750
29813.m001508 Ricinus communis 29813.m001508 I 0.739
TCM_011687 Theobroma cacao TCM_011687 I 0.739
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.729
Cla018884 Citrullus lanatus Cla018884 I 0.729
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.717
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.717
OPUNC11G18320 Oryza punctata OPUNC11G18320 N 0.714
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.714
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.714
Lus10037166.g Linum usitatissimum Lus10037166.g N 0.714
Cagra.0887s0001 Capsella grandiflora Cagra.0887s0001 I 0.714
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.714
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.708