Gorai.002G223100 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.002G223100 T258387_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.938 0.938
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.896 0.896
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.854 0.854
PI
M08148_2.00 		Arabidopsis thaliana
MCMAAARWRGAAAR
YTTTCYWYTTTKGK		 ChIP-seq
Mathelier et al.(2014)
MA0559.1 		0.750 0.750
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.729 0.729
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.729 0.729
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.729 0.729
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.708 0.708
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G223100.1 MADS box 10 57

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.958
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.938
TCM_035212 Theobroma cacao TCM_035212 I 0.938
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.938
PI Vitis vinifera VIT_18s0001g01760 I 0.917
29648.m001978 Ricinus communis 29648.m001978 I 0.917
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.896
Pm004718 Prunus mume Pm004718 I 0.896
Cla023547 Citrullus lanatus Cla023547 I 0.896
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.896
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.896
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.896
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.896
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.875
mgf003143m Mimulus guttatus mgf003143m I 0.875
Ca_13111 Cicer arietinum Ca_13111 I 0.875
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.875
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.875
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.875
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.875
mgf008207m Mimulus guttatus mgf008207m I 0.875
mgf006158m Mimulus guttatus mgf006158m I 0.875
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.875
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.875
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.854
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.854
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.854
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.854
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.854
Ca_03887 Cicer arietinum Ca_03887 I 0.854
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.854
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.854
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.833
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.833
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.833
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.833
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.833
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.833
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.833
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.833
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.812
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.800
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.792
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.771
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.771
TCM_000266 Theobroma cacao TCM_000266 I 0.771
AP3 Vitis vinifera VIT_18s0001g13460 I 0.771
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.771
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.771
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.771
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.750
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.750
Pm006266 Prunus mume Pm006266 I 0.750
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.750
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.750
Cla021117 Citrullus lanatus Cla021117 I 0.750
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.750
Ca_04909 Cicer arietinum Ca_04909 I 0.750
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.750
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.750
Bo3g010390 Brassica oleracea Bo3g010390 I 0.750
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.750
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.750
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.750
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.750
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.750
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.750
Aquca_014_00308 Aquilegia coerulea Aquca_014_00308 I 0.750
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.750
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.750
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.750
PI Arabidopsis thaliana AT5G20240 D 0.750
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.750
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.750
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.750
Pm026712 Prunus mume Pm026712 I 0.745
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.729
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.729
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.729
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.729
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.729
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.729
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.729
MDP0000315938 Malus domestica MDP0000315938 I 0.729
AP3 Arabidopsis thaliana AT3G54340 D 0.729
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.729
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.729
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.729
MDP0000224779 Malus domestica MDP0000224779 I 0.729
MDP0000184294 Malus domestica MDP0000184294 I 0.729
Bo2g020730 Brassica oleracea Bo2g020730 I 0.729
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.729
Bo9g152080 Brassica oleracea Bo9g152080 I 0.729
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.729
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.729
MDP0000133037 Malus domestica MDP0000133037 I 0.729
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.729
Bo3g014100 Brassica oleracea Bo3g014100 I 0.729
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.729
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.729
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.729
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.729
Ca_01994 Cicer arietinum Ca_01994 I 0.729
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.729
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.729
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.729
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.729
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.729
29782.m000119 Ricinus communis 29782.m000119 I 0.729
Bra002285 Brassica rapa Bra002285 I 0.729
Bra020093 Brassica rapa Bra020093 I 0.729
Bra006549 Brassica rapa Bra006549 I 0.729
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.708
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.708
LPERR04G11770 Leersia perrieri LPERR04G11770 I 0.708
OPUNC04G12890 Oryza punctata OPUNC04G12890 I 0.708
Si007221m.g Setaria italica Si007221m.g I 0.708
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.708
GRMZM2G055782 Zea mays GRMZM2G055782 I 0.708
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.708
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.708
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.708
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.708
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.708
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.708
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.708
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.708
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.708
SapurV1A.0168s0400 Salix purpurea SapurV1A.0168s0400 I 0.708
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.708
Bo4g120010 Brassica oleracea Bo4g120010 I 0.708
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.708
OB06G35020 Oryza brachyantha OB06G35020 I 0.708
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.708
Bo8g083600 Brassica oleracea Bo8g083600 I 0.708
Bra007067 Brassica rapa Bra007067 I 0.708
Bra014822 Brassica rapa Bra014822 I 0.708
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.708
OBART06G27230 Oryza barthii OBART06G27230 I 0.708
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.708
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.708
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.708
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.708
MADS16 Oryza sativa OS06G0712700 D 0.708
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.708
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.708
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.708
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.708
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.708
PK22420.1 Cannabis sativa PK22420.1 I 0.702