Gorai.005G087600 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.005G087600 T258402_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MADS2_PETHY
M10998_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.938 0.938
Q9AVU7_MALDO
M11027_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.917 0.917
FBP1_PETHY
M10996_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP1_01
0.896 0.896
PI
M08148_2.00
Arabidopsis thaliana
MCMAAARWRGAAAR

YTTTCYWYTTTKGK
ChIP-seq
Mathelier et al.(2014)
MA0559.1
0.792 0.792
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA

TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.750 0.750
Q8VWZ4_MALDO
M11026_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
0.750 0.750
AP3
M10919_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.750 0.750
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.729 0.729
MADS16
M10971_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.729 0.729
Q9ZRA5_MALDO
M11030_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_04
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G087600.1 MADS box 60 107
Gorai.005G087600.2 MADS box 60 107

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.979
TCM_035212 Theobroma cacao TCM_035212 I 0.979
PI Vitis vinifera VIT_18s0001g01760 I 0.958
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.958
29648.m001978 Ricinus communis 29648.m001978 I 0.958
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.938
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.938
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.938
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.938
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.938
Cla023547 Citrullus lanatus Cla023547 I 0.938
Pm004718 Prunus mume Pm004718 I 0.938
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.917
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.917
mgf003143m Mimulus guttatus mgf003143m I 0.917
mgf006158m Mimulus guttatus mgf006158m I 0.917
Ca_13111 Cicer arietinum Ca_13111 I 0.917
mgf008207m Mimulus guttatus mgf008207m I 0.917
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.917
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.917
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.917
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.896
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.896
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.896
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.896
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.896
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.896
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.875
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.875
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.875
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.875
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.875
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.875
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.875
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.875
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.875
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.875
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.854
Ca_03887 Cicer arietinum Ca_03887 I 0.854
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.854
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.833
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.812
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.800
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.792
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.792
Bo3g010390 Brassica oleracea Bo3g010390 I 0.792
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.792
PI Arabidopsis thaliana AT5G20240 D 0.792
AP3 Vitis vinifera VIT_18s0001g13460 I 0.792
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.792
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.792
TCM_000266 Theobroma cacao TCM_000266 I 0.792
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.792
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.792
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.792
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.792
Ca_04909 Cicer arietinum Ca_04909 I 0.771
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.771
Pm006266 Prunus mume Pm006266 I 0.771
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.771
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.771
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.771
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.771
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.771
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.771
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.771
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.771
Cla021117 Citrullus lanatus Cla021117 I 0.771
Bo9g152080 Brassica oleracea Bo9g152080 I 0.771
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.771
Bra002285 Brassica rapa Bra002285 I 0.771
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.771
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.771
Bra020093 Brassica rapa Bra020093 I 0.771
Bo3g014100 Brassica oleracea Bo3g014100 I 0.771
Bra006549 Brassica rapa Bra006549 I 0.771
Bo2g020730 Brassica oleracea Bo2g020730 I 0.771
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.771
Pm026712 Prunus mume Pm026712 I 0.766
AP3 Arabidopsis thaliana AT3G54340 D 0.750
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.750
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.750
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.750
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.750
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.750
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.750
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.750
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.750
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.750
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.750
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.750
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.750
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.750
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.750
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.750
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.750
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.750
MDP0000315938 Malus domestica MDP0000315938 I 0.750
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.750
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.750
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.750
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.750
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.750
MDP0000224779 Malus domestica MDP0000224779 I 0.750
Ca_01994 Cicer arietinum Ca_01994 I 0.750
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.750
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.750
MDP0000133037 Malus domestica MDP0000133037 I 0.750
MDP0000184294 Malus domestica MDP0000184294 I 0.750
29782.m000119 Ricinus communis 29782.m000119 I 0.750
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.729
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.729
Bo8g083600 Brassica oleracea Bo8g083600 I 0.729
Bo4g120010 Brassica oleracea Bo4g120010 I 0.729
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.729
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.729
Bra007067 Brassica rapa Bra007067 I 0.729
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.729
Bra014822 Brassica rapa Bra014822 I 0.729
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.729
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.729
MADS16 Oryza sativa OS06G0712700 D 0.729
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.729
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.729
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.729
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.729
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.729
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.729
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.729
Si007221m.g Setaria italica Si007221m.g I 0.729
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.729
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.729
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.729
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.729
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.729
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.729
Aquca_014_00308 Aquilegia coerulea Aquca_014_00308 I 0.729
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.729
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.729
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.729
OBART06G27230 Oryza barthii OBART06G27230 I 0.729
OB06G35020 Oryza brachyantha OB06G35020 I 0.729
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.729
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.708
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.708
Q9ZRA5_MALDO Malus domestica Q9ZRA5_MALDO D 0.708
GSMUA_Achr3G02280_001 Musa acuminata GSMUA_Achr3G02280_001 I 0.708
Pm018087 Prunus mume Pm018087 I 0.708
PRUPE_ppa019932mg Prunus persica PRUPE_ppa019932mg I 0.708
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.708
mgf015533m Mimulus guttatus mgf015533m I 0.708
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.708
MDP0000289836 Malus domestica MDP0000289836 I 0.708
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.708
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.708
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.708