Gorai.013G210200 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.013G210200 T258508_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G210200.1 MADS box 10 33

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.792
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.792
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.708
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.792
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.792
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.750
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.750
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.750
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.708
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.750
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.708
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.750
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.750
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.750
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I 0.917
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.750
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.792
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.792
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.792
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.792
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.750
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.708
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.708
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.708
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.750
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.750
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.792
MDP0000925348 Malus domestica MDP0000925348 I 0.750
MDP0000846004 Malus domestica MDP0000846004 I 0.792
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.792
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.750
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.750
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.792
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.750
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.750
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.708
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.750
TCM_026842 Theobroma cacao TCM_026842 I 0.792
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.792
Ca_06495 Cicer arietinum Ca_06495 I 0.750
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.750
Ca_08934 Cicer arietinum Ca_08934 I 0.708
Pm003257 Prunus mume Pm003257 I 0.750
Cla009163 Citrullus lanatus Cla009163 I 0.708
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.750
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.708
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.708
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.708
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.750
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.708
Bra018490 Brassica rapa Bra018490 I 0.708
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.708
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.708
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.708
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.708
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.708
Ca_13275 Cicer arietinum Ca_13275 I 0.708
Gorai.013G210600 Gossypium raimondii Gorai.013G210600 N 0.833
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.750
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.708
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.750
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.750
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.708
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.708
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.750
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.708
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.708
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.708
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.750
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N 0.708
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.708
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.750
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.708
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N 0.792
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.750
Gorai.011G189000 Gossypium raimondii Gorai.011G189000 N 0.750
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.708