Lus10014578.g (Linum usitatissimum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Lus10014578.g T258558_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA

TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10014578 MADS box 10 58

Links

Other MADS box family TFs
Other Linum usitatissimum TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30128.m008984 Ricinus communis 30128.m008984 I 0.812
30199.m000879 Ricinus communis 30199.m000879 I 0.809
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.744
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.756
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.733
AGL80 Arabidopsis thaliana AT5G48670 D 0.812
Bo2g104810 Brassica oleracea Bo2g104810 I 0.792
Bo5g145000 Brassica oleracea Bo5g145000 I 0.711
Bo9g078450 Brassica oleracea Bo9g078450 I 0.792
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.733
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.792
Bra018490 Brassica rapa Bra018490 I 0.812
Bra029469 Brassica rapa Bra029469 I 0.792
Bra041022 Brassica rapa Bra041022 I 0.711
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.729
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.729
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.711
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.875
Ca_06495 Cicer arietinum Ca_06495 I 0.773
Ca_08934 Cicer arietinum Ca_08934 I 0.727
Ca_13275 Cicer arietinum Ca_13275 I 0.844
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.792
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.812
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.812
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.783
Cla005226 Citrullus lanatus Cla005226 I 0.867
Cla009163 Citrullus lanatus Cla009163 I 0.711
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.867
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.733
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.804
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.804
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.804
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.848
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.723
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.761
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.756
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.733
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.766
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.705
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.702
evm.TU.contig_25253.5 Carica papaya evm.TU.contig_25253.5 I 0.724
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.733
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.778
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.733
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.702
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.771
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.795
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.735
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.756
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.727
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.727
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.756
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.744
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.783
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.711
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.724
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.711
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.800
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.818
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.756
evm.TU.contig_46342 Carica papaya evm.TU.contig_46342 N 0.700
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.745
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.800
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.708
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.750
evm.TU.supercontig_135.3 Carica papaya evm.TU.supercontig_135.3 N 0.714
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.729
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.804
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.756
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.778
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.738
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.761
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.733
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.804
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.702
evm.TU.supercontig_30.163 Carica papaya evm.TU.supercontig_30.163 N 0.700
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.711
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.750
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.833
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.833
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.854
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.812
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.867
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.889
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.711
GLYMA18G05990 Glycine max GLYMA18G05990 N 0.729
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.702
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.708
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.766
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.792
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.708
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.733
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.733
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.767
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.717
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.815
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.759
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.756
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.756
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.815
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.867
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.812
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.792
Lus10022325.g Linum usitatissimum Lus10022325.g N 0.723
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.979
MDP0000123878 Malus domestica MDP0000123878 I 0.741
MDP0000726295 Malus domestica MDP0000726295 I 0.741
MDP0000846004 Malus domestica MDP0000846004 I 0.896
MDP0000925348 Malus domestica MDP0000925348 I 0.867
mgf026186m Mimulus guttatus mgf026186m I 0.750
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.844
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.783
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.750
Pm003257 Prunus mume Pm003257 I 0.766
Pm003258 Prunus mume Pm003258 N 0.711
Pm004396 Prunus mume Pm004396 I 0.889
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.812
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.875
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.854
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.889
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.766
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.830
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.833
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.833
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.729
TCM_025670 Theobroma cacao TCM_025670 I 0.750
TCM_025671 Theobroma cacao TCM_025671 I 0.723
TCM_026842 Theobroma cacao TCM_026842 I 0.792
TCM_026845 Theobroma cacao TCM_026845 I 0.708
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.708
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.750
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.792
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.792
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.708
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.854