Lus10015766.g (Linum usitatissimum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Lus10015766.g T258564_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FLC
M06990_2.00 		Arabidopsis thaliana
WWDMYNDWWWWGGAAASW
WSTTTCCWWWWHNRKHWW		 Dap-seq
OMalley et al.(2016)
AGL25_col_a 		0.708 0.708
FLC
M06991_2.00 		Arabidopsis thaliana
WCYHAAAAWGGAAAS
STTTCCWTTTTDRGW		 Dap-seq
OMalley et al.(2016)
AGL25_colamp_a 		0.708 0.708
FLC
M08147_2.00 		Arabidopsis thaliana
NNWWDCYVAAAWWRGAAAVHH
DDBTTTCYWWTTTBRGHWWNN		 ChIP-seq
Mathelier et al.(2014)
MA0558.1 		0.708 0.708
MADS18
M10973_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS18_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10015766 MADS box 10 57

Links

Other MADS box family TFs
Other Linum usitatissimum TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10037039.g Linum usitatissimum Lus10037039.g I 0.979
GLYMA05G28130 Glycine max GLYMA05G28130 I 0.809
Traes_7AS_360247894 Triticum aestivum Traes_7AS_360247894 I 0.800
Traes_7BS_9D42F9BEA Triticum aestivum Traes_7BS_9D42F9BEA I 0.793
SapurV1A.0658s0010 Salix purpurea SapurV1A.0658s0010 I 0.771
Lus10003123.g Linum usitatissimum Lus10003123.g N 0.771
Eucgr.H04618 Eucalyptus grandis Eucgr.H04618 I 0.750
SapurV1A.1717s0010 Salix purpurea SapurV1A.1717s0010 I 0.750
POPTR_0003s16840 Populus trichocarpa POPTR_0003s16840 I 0.750
SapurV1A.0173s0350 Salix purpurea SapurV1A.0173s0350 I 0.750
POPTR_0003s16870 Populus trichocarpa POPTR_0003s16870 I 0.750
GLYMA08G11110 Glycine max GLYMA08G11110 I 0.750
Traes_7AS_376CD50EA Triticum aestivum Traes_7AS_376CD50EA I 0.729
Lus10034370.g Linum usitatissimum Lus10034370.g I 0.729
OB07G27140 Oryza brachyantha OB07G27140 I 0.729
Lus10005081.g Linum usitatissimum Lus10005081.g I 0.729
MLOC_4407 Hordeum vulgare MLOC_4407 I 0.729
MTR_4g093030 Medicago truncatula MTR_4g093030 I 0.729
Gorai.003G103000 Gossypium raimondii Gorai.003G103000 I 0.729
Eucgr.K02711 Eucalyptus grandis Eucgr.K02711 I 0.729
OBART08G21560 Oryza barthii OBART08G21560 I 0.729
ONIVA08G16700 Oryza nivara ONIVA08G16700 I 0.729
ORUFI08G24040 Oryza rufipogon ORUFI08G24040 I 0.729
ONIVA08G24570 Oryza nivara ONIVA08G24570 I 0.729
ORGLA08G0229900 Oryza glaberrima ORGLA08G0229900 I 0.729
ORGLA08G0137000 Oryza glaberrima ORGLA08G0137000 I 0.729
OPUNC08G13690 Oryza punctata OPUNC08G13690 I 0.729
Carubv10006544m.g Capsella rubella Carubv10006544m.g I 0.729
OMERI06G13650 Oryza meridionalis OMERI06G13650 I 0.729
OGLUM08G16360 Oryza glumaepatula OGLUM08G16360 I 0.729
POPTR_0001s13660 Populus trichocarpa POPTR_0001s13660 I 0.729
OGLUM08G22840 Oryza glumaepatula OGLUM08G22840 I 0.729
OLONG_011763 Oryza longistaminata OLONG_011763 I 0.729
OS08G0531900 Oryza sativa OS08G0531900 I 0.729
OBART08G15610 Oryza barthii OBART08G15610 I 0.729
AMTR_s00109p00015260 Amborella trichopoda AMTR_s00109p00015260 I 0.729
Traes_7DS_05F0F0B64 Triticum aestivum Traes_7DS_05F0F0B64 I 0.729
SapurV1A.5743s0010 Salix purpurea SapurV1A.5743s0010 I 0.729
Bo8g050720 Brassica oleracea Bo8g050720 I 0.729
Bo8g091790 Brassica oleracea Bo8g091790 I 0.729
Bra006051 Brassica rapa Bra006051 I 0.729
SapurV1A.2188s0030 Salix purpurea SapurV1A.2188s0030 I 0.729
Traes_7BS_DC9822CEF Triticum aestivum Traes_7BS_DC9822CEF I 0.729
TCM_008716 Theobroma cacao TCM_008716 I 0.729
Traes_5AS_029A65B0A Triticum aestivum Traes_5AS_029A65B0A I 0.729
Traes_5DS_3EBE121C7 Triticum aestivum Traes_5DS_3EBE121C7 I 0.729
BGIOSGA026939 Oryza indica BGIOSGA026939 I 0.729
BGIOSGA029053 Oryza indica BGIOSGA029053 I 0.729
Bo3g005470 Brassica oleracea Bo3g005470 I 0.729
Bra007324 Brassica rapa Bra007324 I 0.729
SapurV1A.1446s0020 Salix purpurea SapurV1A.1446s0020 I 0.729
SapurV1A.0173s0300 Salix purpurea SapurV1A.0173s0300 I 0.729
Traes_7DS_59CBF5647 Triticum aestivum Traes_7DS_59CBF5647 I 0.729
TRIUR3_09267 Triticum urartu TRIUR3_09267 I 0.729
TRIUR3_17292 Triticum urartu TRIUR3_17292 I 0.729
SapurV1A.0173s0320 Salix purpurea SapurV1A.0173s0320 I 0.729
F775_25533 Aegilops tauschii F775_25533 I 0.729
SapurV1A.0173s0340 Salix purpurea SapurV1A.0173s0340 I 0.729
SapurV1A.0833s0010 Salix purpurea SapurV1A.0833s0010 I 0.729
Traes_7DS_D9008CC09 Triticum aestivum Traes_7DS_D9008CC09 I 0.729
Traes_2DL_6A10DD109 Triticum aestivum Traes_2DL_6A10DD109 I 0.723
PK27158.1 Cannabis sativa PK27158.1 I 0.714
Bostr.18351s0063 Boechera stricta Bostr.18351s0063 I 0.708
TRIUR3_30872 Triticum urartu TRIUR3_30872 I 0.708
Cucsa.257910 Cucumis sativus Cucsa.257910 I 0.708
cassava15798.m1 Manihot esculenta cassava15798.m1 I 0.708
mgf022278m Mimulus guttatus mgf022278m I 0.708
TRIUR3_09108 Triticum urartu TRIUR3_09108 I 0.708
cassava28648.m1 Manihot esculenta cassava28648.m1 I 0.708
Traes_7AS_8123257BA Triticum aestivum Traes_7AS_8123257BA I 0.708
mgf004211m Mimulus guttatus mgf004211m I 0.708
Bostr.25542s0226 Boechera stricta Bostr.25542s0226 I 0.708
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.708
SapurV1A.4216s0020 Salix purpurea SapurV1A.4216s0020 I 0.708
Thhalv10001597m.g Eutrema salsugineum Thhalv10001597m.g I 0.708
SapurV1A.0881s0020 Salix purpurea SapurV1A.0881s0020 I 0.708
SapurV1A.0400s0280 Salix purpurea SapurV1A.0400s0280 I 0.708
Pavir.J26790 Panicum virgatum Pavir.J26790 I 0.708
SapurV1A.0008s0740 Salix purpurea SapurV1A.0008s0740 I 0.708
Thhalv10004949m.g Eutrema salsugineum Thhalv10004949m.g I 0.708
Thhalv10014726m.g Eutrema salsugineum Thhalv10014726m.g I 0.708
PK14825.1 Cannabis sativa PK14825.1 I 0.708
chr2.CM0338.170.nc Lotus japonicus chr2.CM0338.170.nc I 0.708
PK01844.1 Cannabis sativa PK01844.1 I 0.708
Thhalv10026205m.g Eutrema salsugineum Thhalv10026205m.g I 0.708
Thhalv10026139m.g Eutrema salsugineum Thhalv10026139m.g I 0.708
Pavir.J02739 Panicum virgatum Pavir.J02739 I 0.708
Lus10036543.g Linum usitatissimum Lus10036543.g I 0.708
Cagra.5414s0059 Capsella grandiflora Cagra.5414s0059 I 0.708
Carubv10006453m.g Capsella rubella Carubv10006453m.g I 0.708
Cagra.2248s0020 Capsella grandiflora Cagra.2248s0020 I 0.708
Cagra.1085s0045 Capsella grandiflora Cagra.1085s0045 I 0.708
Cagra.0542s0040 Capsella grandiflora Cagra.0542s0040 I 0.708
Ciclev10012594m.g Citrus clementina Ciclev10012594m.g I 0.708
Eucgr.B03514 Eucalyptus grandis Eucgr.B03514 I 0.708
Lus10029556.g Linum usitatissimum Lus10029556.g I 0.708
Lus10035029.g Linum usitatissimum Lus10035029.g N 0.708
Lus10020477.g Linum usitatissimum Lus10020477.g I 0.708
gene13356-v1.0-hybrid Fragaria vesca gene13356-v1.0-hybrid I 0.708
Eucgr.I02059 Eucalyptus grandis Eucgr.I02059 I 0.708
Bostr.7867s0353 Boechera stricta Bostr.7867s0353 I 0.708
POPTR_0003s16850 Populus trichocarpa POPTR_0003s16850 I 0.708
Bra028599 Brassica rapa Bra028599 I 0.708
Bra029314 Brassica rapa Bra029314 I 0.708
AGL21 Arabidopsis lyrata fgenesh2_kg.7__253__AT4G37940.1 I 0.708
Bra014628 Brassica rapa Bra014628 I 0.708
Bra013891 Brassica rapa Bra013891 I 0.708
Bra010623 Brassica rapa Bra010623 I 0.708
Bra011797 Brassica rapa Bra011797 I 0.708
GLYMA05G07380 Glycine max GLYMA05G07380 I 0.708
GLYMA08G07001 Glycine max GLYMA08G07001 I 0.708
GSMUA_Achr1G24070_001 Musa acuminata GSMUA_Achr1G24070_001 I 0.708
GSMUA_AchrUn_randomG20290_001 Musa acuminata GSMUA_AchrUn_randomG20290_001 I 0.708
GRMZM2G171650 Zea mays GRMZM2G171650 I 0.708
GLYMA17G08890 Glycine max GLYMA17G08890 I 0.708
GLYMA13G32810 Glycine max GLYMA13G32810 I 0.708
GLYMA15G06470 Glycine max GLYMA15G06470 I 0.708
Bra010465 Brassica rapa Bra010465 I 0.708
Bra009055 Brassica rapa Bra009055 I 0.708
Bo1g003270 Brassica oleracea Bo1g003270 I 0.708
Bo1g040180 Brassica oleracea Bo1g040180 I 0.708
BGIOSGA026097 Oryza indica BGIOSGA026097 I 0.708
BGIOSGA005076 Oryza indica BGIOSGA005076 I 0.708
AGL21 Arabidopsis thaliana AT4G37940 I 0.708
FLC Arabidopsis thaliana AT5G10140 D 0.708
Bo3g153080 Brassica oleracea Bo3g153080 I 0.708
Bo4g024840 Brassica oleracea Bo4g024840 I 0.708
Bra003278 Brassica rapa Bra003278 I 0.708
Bra004927 Brassica rapa Bra004927 I 0.708
Bra000392 Brassica rapa Bra000392 I 0.708
Bo7g110310 Brassica oleracea Bo7g110310 I 0.708
Bo4g111230 Brassica oleracea Bo4g111230 I 0.708
Bo6g072840 Brassica oleracea Bo6g072840 I 0.708
TCM_017242 Theobroma cacao TCM_017242 I 0.708
LPERR01G36730 Leersia perrieri LPERR01G36730 I 0.708
AMTR_s00002p00262770 Amborella trichopoda AMTR_s00002p00262770 I 0.708
POPTR_0006s04730 Populus trichocarpa POPTR_0006s04730 I 0.708
Sb03g006210 Sorghum bicolor Sb03g006210 I 0.708
POPTR_0003s16820 Populus trichocarpa POPTR_0003s16820 I 0.708
MADS23 Oryza sativa OS08G0431900 I 0.708
ORUFI07G22480 Oryza rufipogon ORUFI07G22480 I 0.708
MADS18 Oryza sativa OS07G0605200 D 0.708
Sb03g044170 Sorghum bicolor Sb03g044170 I 0.708
Sb06g026300 Sorghum bicolor Sb06g026300 I 0.708
Si014540m.g Setaria italica Si014540m.g I 0.708
TCM_014661 Theobroma cacao TCM_014661 I 0.708
Si010898m.g Setaria italica Si010898m.g I 0.708
Si004582m.g Setaria italica Si004582m.g I 0.708
Sb07g026180 Sorghum bicolor Sb07g026180 I 0.708
FLC Arabidopsis lyrata scaffold_601028.1 I 0.708
ORGLA07G0222800 Oryza glaberrima ORGLA07G0222800 I 0.708
ORGLA01G0361900 Oryza glaberrima ORGLA01G0361900 I 0.708
OGLUM01G46440 Oryza glumaepatula OGLUM01G46440 I 0.708
OGLUM07G21410 Oryza glumaepatula OGLUM07G21410 I 0.708
OBART07G21550 Oryza barthii OBART07G21550 I 0.708
OBART01G42170 Oryza barthii OBART01G42170 I 0.708
OB06G22200 Oryza brachyantha OB06G22200 I 0.708
OB12G20680 Oryza brachyantha OB12G20680 I 0.708
OMERI01G39210 Oryza meridionalis OMERI01G39210 I 0.708
OMERI07G17960 Oryza meridionalis OMERI07G17960 I 0.708
OPUNC01G41110 Oryza punctata OPUNC01G41110 I 0.708
OPUNC07G20110 Oryza punctata OPUNC07G20110 I 0.708
ONIVA07G20220 Oryza nivara ONIVA07G20220 I 0.708
ONIVA01G48250 Oryza nivara ONIVA01G48250 I 0.708
LPERR08G12860 Leersia perrieri LPERR08G12860 I 0.708
OMERI08G12880 Oryza meridionalis OMERI08G12880 I 0.708
Bra031884 Brassica rapa Bra031884 I 0.702