Lus10019089.g (Linum usitatissimum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Lus10019089.g T258574_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL65
M10901_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL65_01
0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10019089 MADS box 10 57

Links

Other MADS box family TFs
Other Linum usitatissimum TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29813.m001508 Ricinus communis 29813.m001508 I 0.783
29908.m005982 Ricinus communis 29908.m005982 I 0.729
30138.m004061 Ricinus communis 30138.m004061 I 0.896
AGL104 Arabidopsis lyrata Al_scaffold_0001_2320 I 0.729
AGL104 Arabidopsis thaliana AT1G22130 I 0.729
AGL30 Arabidopsis thaliana AT2G03060 I 0.717
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.729
AGL65 Arabidopsis thaliana AT1G18750 D 0.854
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.854
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.896
AGL66 Arabidopsis thaliana AT1G77980 I 0.750
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.750
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.812
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.854
Aquca_014_00554 Aquilegia coerulea Aquca_014_00554 I 0.708
BGIOSGA003731 Oryza indica BGIOSGA003731 I 0.708
BGIOSGA026745 Oryza indica BGIOSGA026745 I 0.708
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.739
Bo6g121640 Brassica oleracea Bo6g121640 I 0.729
Bo7g060150 Brassica oleracea Bo7g060150 I 0.729
Bo8g068060 Brassica oleracea Bo8g068060 I 0.854
Bo8g071330 Brassica oleracea Bo8g071330 I 0.729
Bo8g104060 Brassica oleracea Bo8g104060 I 0.854
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.708
Bostr.12659s0064 Boechera stricta Bostr.12659s0064 I 0.708
Bostr.20129s0232 Boechera stricta Bostr.20129s0232 I 0.729
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.854
Bra012308 Brassica rapa Bra012308 I 0.729
Bra015643 Brassica rapa Bra015643 I 0.729
Bra016386 Brassica rapa Bra016386 I 0.729
Bra016544 Brassica rapa Bra016544 I 0.854
Bra025685 Brassica rapa Bra025685 I 0.854
Bra031049 Brassica rapa Bra031049 I 0.854
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.792
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.750
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.708
Cagra.1707s0007 Capsella grandiflora Cagra.1707s0007 I 0.708
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.792
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.792
Carubv10010907m.g Capsella rubella Carubv10010907m.g I 0.708
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.708
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.750
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.729
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.729
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.917
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.917
Ca_18082 Cicer arietinum Ca_18082 I 0.708
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.812
Ciclev10003964m.g Citrus clementina Ciclev10003964m.g I 0.708
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.896
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.729
Cla010361 Citrullus lanatus Cla010361 I 0.771
Cla014721 Citrullus lanatus Cla014721 I 0.708
Cla018884 Citrullus lanatus Cla018884 I 0.729
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.729
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.783
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.875
F775_13266 Aegilops tauschii F775_13266 I 0.833
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.854
gene31290-v1.0-hybrid Fragaria vesca gene31290-v1.0-hybrid I 0.708
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.771
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.875
Gorai.005G093000 Gossypium raimondii Gorai.005G093000 I 0.708
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.875
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.792
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.729
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.771
GSMUA_Achr9G13010_001 Musa acuminata GSMUA_Achr9G13010_001 I 0.708
LjSGA_031058.2 Lotus japonicus LjSGA_031058.2 I 0.739
LPERR06G07270 Leersia perrieri LPERR06G07270 I 0.708
LPERR08G16000 Leersia perrieri LPERR08G16000 I 0.708
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.750
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.729
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.729
Lus10034464.g Linum usitatissimum Lus10034464.g I 0.958
MDP0000146231 Malus domestica MDP0000146231 I 0.729
MDP0000146415 Malus domestica MDP0000146415 I 0.708
MDP0000147667 Malus domestica MDP0000147667 I 0.729
MDP0000193129 Malus domestica MDP0000193129 I 0.833
MDP0000243965 Malus domestica MDP0000243965 I 0.708
MDP0000773068 Malus domestica MDP0000773068 I 0.708
MDP0000919323 Malus domestica MDP0000919323 I 0.708
mgf000945m Mimulus guttatus mgf000945m I 0.750
mgf004425m Mimulus guttatus mgf004425m I 0.750
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.812
MTR_4g084740 Medicago truncatula MTR_4g084740 I 0.729
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.833
MTR_5g041650 Medicago truncatula MTR_5g041650 I 0.708
OB08G26170 Oryza brachyantha OB08G26170 I 0.729
OBART06G07860 Oryza barthii OBART06G07860 I 0.708
OBART08G19110 Oryza barthii OBART08G19110 I 0.708
OBART11G21780 Oryza barthii OBART11G21780 N 0.729
OGLUM06G08350 Oryza glumaepatula OGLUM06G08350 I 0.708
OGLUM08G20110 Oryza glumaepatula OGLUM08G20110 I 0.708
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.750
OLONG_004474 Oryza longistaminata OLONG_004474 I 0.708
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.750
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.739
ONIVA06G09080 Oryza nivara ONIVA06G09080 I 0.708
OPUNC06G07570 Oryza punctata OPUNC06G07570 I 0.708
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.896
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.729
orange1.1g039560m.g Citrus sinensis orange1.1g039560m.g I 0.708
ORGLA06G0074200 Oryza glaberrima ORGLA06G0074200 I 0.708
ORGLA08G0167200 Oryza glaberrima ORGLA08G0167200 I 0.708
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.729
ORUFI06G08110 Oryza rufipogon ORUFI06G08110 I 0.708
ORUFI08G21330 Oryza rufipogon ORUFI08G21330 I 0.708
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.729
OS06G0223300 Oryza sativa OS06G0223300 I 0.708
OS08G0494100 Oryza sativa OS08G0494100 I 0.708
OS11G0658700 Oryza sativa OS11G0658700 N 0.729
Pavir.Fb01739 Panicum virgatum Pavir.Fb01739 I 0.708
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.792
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.792
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.812
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.875
PGSC0003DMG400019525 Solanum tuberosum PGSC0003DMG400019525 N 0.708
PK03147.1 Cannabis sativa PK03147.1 I 0.729
PK21701.1 Cannabis sativa PK21701.1 I 0.854
Pm006479 Prunus mume Pm006479 I 0.750
Pm019181 Prunus mume Pm019181 I 0.729
Pm024895 Prunus mume Pm024895 I 0.792
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.729
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.708
PRUPE_ppa007816mg Prunus persica PRUPE_ppa007816mg I 0.729
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.792
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.750
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.708
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.750
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.870
Si013985m.g Setaria italica Si013985m.g I 0.708
Si028357m.g Setaria italica Si028357m.g N 0.771
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.771
TCM_001182 Theobroma cacao TCM_001182 I 0.708
TCM_011687 Theobroma cacao TCM_011687 I 0.761
TCM_014051 Theobroma cacao TCM_014051 I 0.938
TCM_034970 Theobroma cacao TCM_034970 I 0.708
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.717
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.833
Thhalv10019686m.g Eutrema salsugineum Thhalv10019686m.g I 0.729
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.854
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.833
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.833
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.833
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.833