Lus10030663.g (Linum usitatissimum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Lus10030663.g T258608_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10030663 MADS box 18 65

Links

Other MADS box family TFs
Other Linum usitatissimum TFs

208 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.711
MDP0000434703 Malus domestica MDP0000434703 I 0.729
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.750
gene01788-v1.0-hybrid Fragaria vesca gene01788-v1.0-hybrid I 0.812
AGL62 Arabidopsis thaliana AT5G60440 I 0.729
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.771
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N 0.702
evm.TU.contig_41623 Carica papaya evm.TU.contig_41623 N 0.771
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.771
evm.TU.contig_37082 Carica papaya evm.TU.contig_37082 N 0.708
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.771
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.750
evm.TU.contig_35157.2 Carica papaya evm.TU.contig_35157.2 N 0.708
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.708
evm.TU.supercontig_106.19 Carica papaya evm.TU.supercontig_106.19 N 0.771
evm.TU.supercontig_106.20 Carica papaya evm.TU.supercontig_106.20 N 0.729
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.771
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.750
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.729
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.729
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.771
evm.TU.supercontig_347.2 Carica papaya evm.TU.supercontig_347.2 N 0.729
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.771
evm.TU.supercontig_347.10 Carica papaya evm.TU.supercontig_347.10 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.792
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.750
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.708
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.750
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.750
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.750
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.750
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N 0.750
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.771
Carubv10024914m.g Capsella rubella Carubv10024914m.g N 0.792
Carubv10007644m.g Capsella rubella Carubv10007644m.g N 0.750
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.771
Cagra.1695s0023 Capsella grandiflora Cagra.1695s0023 N 0.750
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N 0.792
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N 0.812
Bostr.7867s1515 Boechera stricta Bostr.7867s1515 N 0.771
Ciclev10030387m.g Citrus clementina Ciclev10030387m.g N 0.729
Eucgr.G01185 Eucalyptus grandis Eucgr.G01185 N 0.708
Eucgr.H04834 Eucalyptus grandis Eucgr.H04834 N 0.771
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.750
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.750
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.729
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N 0.702
evm.TU.contig_27553.3 Carica papaya evm.TU.contig_27553.3 N 0.729
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.750
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.750
evm.TU.contig_24748.5 Carica papaya evm.TU.contig_24748.5 N 0.729
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.750
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.708
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.750
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.750
LjSGA_042140.1 Lotus japonicus LjSGA_042140.1 N 0.792
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N 0.812
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.729
SapurV1A.1128s0080 Salix purpurea SapurV1A.1128s0080 N 0.771
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.708
SapurV1A.0019s0700 Salix purpurea SapurV1A.0019s0700 N 0.812
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.729
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N 0.750
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.750
orange1.1g036705m.g Citrus sinensis orange1.1g036705m.g N 0.729
MDP0000278770 Malus domestica MDP0000278770 N 0.708
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N 0.812
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.750
LjSGA_079719.1 Lotus japonicus LjSGA_079719.1 N 0.812
LjSGA_025167.1 Lotus japonicus LjSGA_025167.1 N 0.771
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.792
chr5.LjT25B19.190.nd Lotus japonicus chr5.LjT25B19.190.nd N 0.729
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.792
chr2.CM0904.120.nd Lotus japonicus chr2.CM0904.120.nd N 0.729
chr1.CM0088.830.nc Lotus japonicus chr1.CM0088.830.nc N 0.833
Thhalv10027307m.g Eutrema salsugineum Thhalv10027307m.g N 0.708
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.750
Thhalv10017754m.g Eutrema salsugineum Thhalv10017754m.g N 0.729
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.708
MDP0000233925 Malus domestica MDP0000233925 N 0.708
MDP0000221590 Malus domestica MDP0000221590 N 0.750
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.750
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.771
evm.TU.supercontig_654.5 Carica papaya evm.TU.supercontig_654.5 N 0.708
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.771
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.771
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.750
evm.TU.supercontig_505.6 Carica papaya evm.TU.supercontig_505.6 N 0.708
evm.TU.supercontig_505.5 Carica papaya evm.TU.supercontig_505.5 N 0.708
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.750
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.750
evm.TU.supercontig_758.1 Carica papaya evm.TU.supercontig_758.1 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.750
MDP0000168914 Malus domestica MDP0000168914 N 0.812
Lus10030824.g Linum usitatissimum Lus10030824.g N 0.958
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.771
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.812
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.771
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.792
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.771
evm.TU.supercontig_851.1 Carica papaya evm.TU.supercontig_851.1 N 0.750
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.750
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.750
PGSC0003DMG400039595 Solanum tuberosum PGSC0003DMG400039595 N 0.729
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.729
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.708
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.729
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.708
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.708
MTR_1g077360 Medicago truncatula MTR_1g077360 N 0.750
MTR_1g075600 Medicago truncatula MTR_1g075600 N 0.750
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.708
GLYMA20G27350 Glycine max GLYMA20G27350 N 0.812
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.708
MTR_2g085250 Medicago truncatula MTR_2g085250 N 0.729
MTR_2g085280 Medicago truncatula MTR_2g085280 N 0.729
MTR_2g093190 Medicago truncatula MTR_2g093190 N 0.729
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N 0.729
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.723
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.729
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.708
MTR_5g055100 Medicago truncatula MTR_5g055100 N 0.729
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.708
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.812
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.750
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.729
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.708
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.729
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.708
Bo4g157220 Brassica oleracea Bo4g157220 N 0.708
Bo2g024910 Brassica oleracea Bo2g024910 N 0.708
Bo1g112460 Brassica oleracea Bo1g112460 N 0.750
AT4G36590 Arabidopsis thaliana AT4G36590 N 0.750
AGL61 Arabidopsis thaliana AT2G24840 N 0.792
AGL23 Arabidopsis thaliana AT1G65360 N 0.729
AGL28 Arabidopsis thaliana AT1G01530 N 0.771
AMTR_s00025p00244880 Amborella trichopoda AMTR_s00025p00244880 N 0.729
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N 0.792
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.792
Bo4g165540 Brassica oleracea Bo4g165540 N 0.708
Bo5g113750 Brassica oleracea Bo5g113750 N 0.750
Bo8g099550 Brassica oleracea Bo8g099550 N 0.750
GLYMA10G40060 Glycine max GLYMA10G40060 N 0.812
fgenesh1_pm.C_scaffold_7000337 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7000337 N 0.750
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.750
Bra038225 Brassica rapa Bra038225 N 0.729
Bra032057 Brassica rapa Bra032057 N 0.729
Bra026764 Brassica rapa Bra026764 N 0.792
Bra022434 Brassica rapa Bra022434 N 0.771
Bra007829 Brassica rapa Bra007829 N 0.750
Bra002480 Brassica rapa Bra002480 N 0.750
Bo9g142570 Brassica oleracea Bo9g142570 N 0.771
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.792
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.729
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.771
Pm021071 Prunus mume Pm021071 N 0.750
Pm021070 Prunus mume Pm021070 N 0.833
Pm021018 Prunus mume Pm021018 N 0.771
Pm016629 Prunus mume Pm016629 N 0.771
Cla006571 Citrullus lanatus Cla006571 N 0.771
Ca_26354 Cicer arietinum Ca_26354 N 0.812
Ca_07607 Cicer arietinum Ca_07607 N 0.812
Ca_04665 Cicer arietinum Ca_04665 N 0.729
Ca_04662 Cicer arietinum Ca_04662 N 0.708
Ca_04661 Cicer arietinum Ca_04661 N 0.708
29613.m000367 Ricinus communis 29613.m000367 N 0.875
30099.m001671 Ricinus communis 30099.m001671 N 0.812
30099.m001672 Ricinus communis 30099.m001672 N 0.750
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.729
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.729
mgf024307m Mimulus guttatus mgf024307m N 0.833
mgf022790m Mimulus guttatus mgf022790m N 0.729
mgf022147m Mimulus guttatus mgf022147m N 0.729
mgf018529m Mimulus guttatus mgf018529m N 0.833
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.771
cassava41915.m1 Manihot esculenta cassava41915.m1 N 0.812
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.771
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.708
Ca_04660 Cicer arietinum Ca_04660 N 0.729
Ca_04659 Cicer arietinum Ca_04659 N 0.729
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.729
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.750
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.771
PRUPE_ppa023670mg Prunus persica PRUPE_ppa023670mg N 0.771
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.833
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.729
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.708
POPTR_0009s08740 Populus trichocarpa POPTR_0009s08740 N 0.792
POPTR_0008s04110 Populus trichocarpa POPTR_0008s04110 N 0.812
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.708
PGSC0003DMG400044387 Solanum tuberosum PGSC0003DMG400044387 N 0.812
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.792
Solyc01g106710.1 Solanum lycopersicum Solyc01g106710.1 N 0.812
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.729
VIT_03s0088g00600 Vitis vinifera VIT_03s0088g00600 N 0.750
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.771
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.771
VIT_03s0088g00510 Vitis vinifera VIT_03s0088g00510 N 0.771
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.792
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.729
TCM_040735 Theobroma cacao TCM_040735 N 0.771
TCM_006324 Theobroma cacao TCM_006324 N 0.729
TCM_006323 Theobroma cacao TCM_006323 N 0.792
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.771
PGSC0003DMG400043633 Solanum tuberosum PGSC0003DMG400043633 N 0.812