Lus10031073.g (Linum usitatissimum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Lus10031073.g T258610_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10031073 MADS box 3 50

Links

Other MADS box family TFs
Other Linum usitatissimum TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10035456.g Linum usitatissimum Lus10035456.g N 0.979
SapurV1A.0808s0160 Salix purpurea SapurV1A.0808s0160 N 0.812
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N 0.812
SapurV1A.1313s0050 Salix purpurea SapurV1A.1313s0050 N 0.792
POPTR_0017s07460 Populus trichocarpa POPTR_0017s07460 N 0.792
AGL62 Arabidopsis thaliana AT5G60440 I 0.792
POPTR_0009s08750 Populus trichocarpa POPTR_0009s08750 N 0.792
Ca_04665 Cicer arietinum Ca_04665 N 0.771
MDP0000278770 Malus domestica MDP0000278770 N 0.771
gene01789-v1.0-hybrid Fragaria vesca gene01789-v1.0-hybrid N 0.771
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.771
MDP0000233925 Malus domestica MDP0000233925 N 0.771
29838.m001672 Ricinus communis 29838.m001672 N 0.771
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.771
Pm021071 Prunus mume Pm021071 N 0.771
30099.m001672 Ricinus communis 30099.m001672 N 0.771
AGL62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002041 N 0.771
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.763
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N 0.750
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.750
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.750
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.750
PRUPE_ppa026089mg Prunus persica PRUPE_ppa026089mg N 0.750
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.750
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.750
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.750
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.750
Pm021018 Prunus mume Pm021018 N 0.750
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.750
cassava33542.m1 Manihot esculenta cassava33542.m1 N 0.750
Cla006571 Citrullus lanatus Cla006571 N 0.750
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.750
TCM_006323 Theobroma cacao TCM_006323 N 0.750
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.750
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.750
Lus10012449.g Linum usitatissimum Lus10012449.g N 0.750
GLYMA13G39016 Glycine max GLYMA13G39016 N 0.750
Thhalv10003426m.g Eutrema salsugineum Thhalv10003426m.g N 0.750
Bra002480 Brassica rapa Bra002480 N 0.750
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.750
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.750
MTR_2g030740 Medicago truncatula MTR_2g030740 N 0.750
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.750
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.750
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.750
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.750
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.750
MDP0000434703 Malus domestica MDP0000434703 I 0.750
GLYMA10G40070 Glycine max GLYMA10G40070 N 0.750
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N 0.729
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N 0.729
GLYMA10G10840 Glycine max GLYMA10G10840 N 0.729
GLYMA10G10930 Glycine max GLYMA10G10930 N 0.729
chr3.CM0279.290.nc Lotus japonicus chr3.CM0279.290.nc N 0.729
GLYMA10G10860 Glycine max GLYMA10G10860 N 0.729
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.729
evm.TU.supercontig_54.68 Carica papaya evm.TU.supercontig_54.68 N 0.729
evm.TU.supercontig_505.2 Carica papaya evm.TU.supercontig_505.2 N 0.729
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N 0.729
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.729
Al_scaffold_0002_1221 Arabidopsis lyrata Al_scaffold_0002_1221 N 0.729
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N 0.729
evm.TU.supercontig_505.4 Carica papaya evm.TU.supercontig_505.4 N 0.729
Bo9g142570 Brassica oleracea Bo9g142570 N 0.729
evm.TU.contig_30114.1 Carica papaya evm.TU.contig_30114.1 N 0.729
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.729
evm.TU.supercontig_695.1 Carica papaya evm.TU.supercontig_695.1 N 0.729
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N 0.729
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N 0.729
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.729
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N 0.729
Solyc01g106720.1 Solanum lycopersicum Solyc01g106720.1 N 0.729
VIT_01s0010g01500 Vitis vinifera VIT_01s0010g01500 N 0.729
Ca_04659 Cicer arietinum Ca_04659 N 0.729
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.729
scaffold_302326.1 Arabidopsis lyrata scaffold_302326.1 I 0.729
PGSC0003DMG400005131 Solanum tuberosum PGSC0003DMG400005131 N 0.729
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.729
Lus10020511.g Linum usitatissimum Lus10020511.g N 0.729
Ca_04660 Cicer arietinum Ca_04660 N 0.729
Gorai.005G263100 Gossypium raimondii Gorai.005G263100 N 0.729
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.729
evm.TU.supercontig_758.2 Carica papaya evm.TU.supercontig_758.2 N 0.729
evm.TU.supercontig_695.7 Carica papaya evm.TU.supercontig_695.7 N 0.729
Pm021070 Prunus mume Pm021070 N 0.729
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.729
MTR_1g105905 Medicago truncatula MTR_1g105905 N 0.729
Thhalv10015908m.g Eutrema salsugineum Thhalv10015908m.g N 0.729
Pavir.J00788 Panicum virgatum Pavir.J00788 I 0.708
orange1.1g039654m.g Citrus sinensis orange1.1g039654m.g N 0.708
evm.TU.supercontig_439.7 Carica papaya evm.TU.supercontig_439.7 N 0.708
Pavir.J11717 Panicum virgatum Pavir.J11717 I 0.708
chr5.LjT39E05.40.nd Lotus japonicus chr5.LjT39E05.40.nd N 0.708
Thhalv10022102m.g Eutrema salsugineum Thhalv10022102m.g N 0.708
PDK_20s1551551g001 Phoenix dactylifera PDK_20s1551551g001 I 0.708
evm.TU.supercontig_695.5 Carica papaya evm.TU.supercontig_695.5 N 0.708
cassava21573.m1 Manihot esculenta cassava21573.m1 N 0.708
PGSC0003DMG400006290 Solanum tuberosum PGSC0003DMG400006290 N 0.708
MTR_5g045560 Medicago truncatula MTR_5g045560 N 0.708
MTR_3g080940 Medicago truncatula MTR_3g080940 N 0.708
PGSC0003DMG400039835 Solanum tuberosum PGSC0003DMG400039835 N 0.708
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N 0.708
PRUPE_ppa021886mg Prunus persica PRUPE_ppa021886mg N 0.708
POPTR_0004s13590 Populus trichocarpa POPTR_0004s13590 N 0.708
MTR_3g030770 Medicago truncatula MTR_3g030770 N 0.708
MTR_1g108510 Medicago truncatula MTR_1g108510 N 0.708
GLYMA10G10900 Glycine max GLYMA10G10900 N 0.708
GLYMA10G10770 Glycine max GLYMA10G10770 N 0.708
GLYMA10G10640 Glycine max GLYMA10G10640 N 0.708
GLYMA10G40080 Glycine max GLYMA10G40080 N 0.708
GRMZM5G891280 Zea mays GRMZM5G891280 I 0.708
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.708
LPERR01G04800 Leersia perrieri LPERR01G04800 N 0.708
Sb0836s002010 Sorghum bicolor Sb0836s002010 N 0.708
Sb09g029120 Sorghum bicolor Sb09g029120 I 0.708
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.708
Ciclev10030142m.g Citrus clementina Ciclev10030142m.g N 0.708
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.708
evm.TU.contig_30005.4 Carica papaya evm.TU.contig_30005.4 N 0.708
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N 0.708
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.708
evm.TU.supercontig_106.18 Carica papaya evm.TU.supercontig_106.18 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
mgf022625m Mimulus guttatus mgf022625m N 0.708
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.708
Si019951m.g Setaria italica Si019951m.g I 0.708
Ca_04662 Cicer arietinum Ca_04662 N 0.708
29693.m002042 Ricinus communis 29693.m002042 N 0.708
cassava8711.m1 Manihot esculenta cassava8711.m1 N 0.708
AC234185.1_FG006 Zea mays AC234185.1_FG006 I 0.708
evm.TU.supercontig_347.8 Carica papaya evm.TU.supercontig_347.8 N 0.708