MDP0000181583 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000181583 T258670_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FBP24_PETHY
M10997_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP24_01
0.833 0.833
M17_MAIZE
M10959_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$M17_01
0.750 0.750
Q9ATE9_PETHY
M11012_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP20_01
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000181583 MADS box 62 109

Links

Other MADS box family TFs
Other Malus domestica TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRUPE_ppa014844mg Prunus persica PRUPE_ppa014844mg I 1.000
Pm010767 Prunus mume Pm010767 I 1.000
MDP0000179718 Malus domestica MDP0000179718 I 0.970
MDP0000278738 Malus domestica MDP0000278738 I 0.958
MDP0000128016 Malus domestica MDP0000128016 I 0.958
gene20015-v1.0-hybrid Fragaria vesca gene20015-v1.0-hybrid I 0.938
30221.m002218 Ricinus communis 30221.m002218 I 0.896
cassava5692.m1 Manihot esculenta cassava5692.m1 I 0.896
Gorai.013G069000 Gossypium raimondii Gorai.013G069000 I 0.896
Ca_22438 Cicer arietinum Ca_22438 I 0.875
orange1.1g036652m.g Citrus sinensis orange1.1g036652m.g I 0.875
XM_002310609.1 Populus trichocarpa POPTR_0007s07620 I 0.875
TCM_007713 Theobroma cacao TCM_007713 I 0.875
cassava9889.m1 Manihot esculenta cassava9889.m1 I 0.875
Ciclev10032489m.g Citrus clementina Ciclev10032489m.g I 0.875
evm.TU.supercontig_30.148 Carica papaya evm.TU.supercontig_30.148 I 0.875
Gorai.012G134200 Gossypium raimondii Gorai.012G134200 I 0.875
SapurV1A.0333s0300 Salix purpurea SapurV1A.0333s0300 I 0.854
SapurV1A.4660s0010 Salix purpurea SapurV1A.4660s0010 I 0.854
POPTR_0005s09340 Populus trichocarpa POPTR_0005s09340 I 0.854
Lus10017388.g Linum usitatissimum Lus10017388.g I 0.833
FBP24_PETHY Petunia x hybrida FBP24_PETHY D 0.833
Lus10010184.g Linum usitatissimum Lus10010184.g I 0.833
Cla010047 Citrullus lanatus Cla010047 I 0.833
TT16 Vitis vinifera VIT_10s0042g00820 I 0.833
Solyc11g005120.1 Solanum lycopersicum Solyc11g005120.1 I 0.812
SapurV1A.0103s0250 Salix purpurea SapurV1A.0103s0250 I 0.812
Bra013028 Brassica rapa Bra013028 I 0.792
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.792
TT16 Vitis vinifera VIT_01s0011g01560 I 0.792
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.792
Bo7g097810 Brassica oleracea Bo7g097810 I 0.792
GOA Vitis vinifera VIT_02s0025g02350 I 0.792
MTR_1g038300 Medicago truncatula MTR_1g038300 I 0.792
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.771
POPTR_0012s14770 Populus trichocarpa POPTR_0012s14770 I 0.771
SapurV1A.0129s0130 Salix purpurea SapurV1A.0129s0130 I 0.771
GLYMA20G00401 Glycine max GLYMA20G00401 I 0.771
SapurV1A.0129s0120 Salix purpurea SapurV1A.0129s0120 I 0.771
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.771
GLYMA09G42061 Glycine max GLYMA09G42061 I 0.771
SapurV1A.0129s0140 Salix purpurea SapurV1A.0129s0140 I 0.771
OPUNC09G14150 Oryza punctata OPUNC09G14150 I 0.758
Bo9g014270 Brassica oleracea Bo9g014270 I 0.750
M17_MAIZE Zea mays M17_MAIZE D 0.750
Bra026507 Brassica rapa Bra026507 I 0.750
mgf008634m Mimulus guttatus mgf008634m I 0.750
BGIOSGA007056 Oryza indica BGIOSGA007056 I 0.750
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.750
AMTR_s00001p00270400 Amborella trichopoda AMTR_s00001p00270400 I 0.750
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.750
Si018183m.g Setaria italica Si018183m.g I 0.750
ORUFI02G05500 Oryza rufipogon ORUFI02G05500 I 0.750
ONIVA02G05710 Oryza nivara ONIVA02G05710 I 0.750
ORGLA02G0049700 Oryza glaberrima ORGLA02G0049700 I 0.750
OMERI02G06250 Oryza meridionalis OMERI02G06250 I 0.750
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.750
MADS29 Oryza sativa OS02G0170300 I 0.750
LPERR02G04610 Leersia perrieri LPERR02G04610 I 0.750
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.750
OGLUM02G05240 Oryza glumaepatula OGLUM02G05240 I 0.750
OPUNC02G04560 Oryza punctata OPUNC02G04560 I 0.750
OBART02G05380 Oryza barthii OBART02G05380 I 0.750
OB02G14670 Oryza brachyantha OB02G14670 I 0.750
Bo2g160980 Brassica oleracea Bo2g160980 I 0.729
BRADI3G05260 Brachypodium distachyon BRADI3G05260 I 0.729
Bra029365 Brassica rapa Bra029365 I 0.729
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.729
MTR_5g031000 Medicago truncatula MTR_5g031000 I 0.729
MLOC_65966 Hordeum vulgare MLOC_65966 I 0.729
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.729
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.729
F775_30836 Aegilops tauschii F775_30836 I 0.729
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.729
AMTR_s00002p00262770 Amborella trichopoda AMTR_s00002p00262770 I 0.729
GLYMA10G38580 Glycine max GLYMA10G38580 I 0.729
Aquca_022_00241 Aquilegia coerulea Aquca_022_00241 I 0.729
POPTR_0015s14950 Populus trichocarpa POPTR_0015s14950 I 0.729
GRMZM2G130382 Zea mays GRMZM2G130382 I 0.729
Traes_6AS_57E50EE92 Triticum aestivum Traes_6AS_57E50EE92 I 0.729
Traes_6BS_5789476CB Triticum aestivum Traes_6BS_5789476CB I 0.729
GLYMA09G27461 Glycine max GLYMA09G27461 I 0.729
GLYMA09G33451 Glycine max GLYMA09G33451 I 0.729
TRIUR3_26896 Triticum urartu TRIUR3_26896 I 0.729
Traes_6DS_9BBDCC9F7 Triticum aestivum Traes_6DS_9BBDCC9F7 I 0.729
GLYMA01G02525 Glycine max GLYMA01G02525 I 0.729
Traes_4BL_9A17EA3B7 Triticum aestivum Traes_4BL_9A17EA3B7 I 0.724
PK26896.1 Cannabis sativa PK26896.1 I 0.723
gene26118-v1.0-hybrid Fragaria vesca gene26118-v1.0-hybrid I 0.714
PK27158.1 Cannabis sativa PK27158.1 I 0.714
orange1.1g040075m.g Citrus sinensis orange1.1g040075m.g I 0.708
MDP0000783966 Malus domestica MDP0000783966 I 0.708
MDP0000233948 Malus domestica MDP0000233948 I 0.708
MDP0000193953 Malus domestica MDP0000193953 I 0.708
PK20651.1 Cannabis sativa PK20651.1 I 0.708
MDP0000209705 Malus domestica MDP0000209705 I 0.708
MDP0000192806 Malus domestica MDP0000192806 I 0.708
TCM_015674 Theobroma cacao TCM_015674 I 0.708
GSMUA_Achr3G23580_001 Musa acuminata GSMUA_Achr3G23580_001 I 0.708
MTR_4g036050 Medicago truncatula MTR_4g036050 I 0.708
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.708
TCM_000992 Theobroma cacao TCM_000992 I 0.708
GSMUA_Achr2G02660_001 Musa acuminata GSMUA_Achr2G02660_001 I 0.708
GLYMA20G29250 Glycine max GLYMA20G29250 I 0.708
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.708
Bo7g098190 Brassica oleracea Bo7g098190 I 0.708
Bra012997 Brassica rapa Bra012997 I 0.708
GLYMA16G32540 Glycine max GLYMA16G32540 I 0.708
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.708
VIT_03s0097g00160 Vitis vinifera VIT_03s0097g00160 I 0.708
Ca_19954 Cicer arietinum Ca_19954 I 0.708
Q9ATE9_PETHY Petunia x hybrida Q9ATE9_PETHY D 0.708
mgf022278m Mimulus guttatus mgf022278m I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.708
Ciclev10016394m.g Citrus clementina Ciclev10016394m.g I 0.708
Pm002166 Prunus mume Pm002166 I 0.708
fgenesh1_pg.scaffold_267000029 Physcomitrella patens fgenesh1_pg.scaffold_267000029 I 0.708
Pm004239 Prunus mume Pm004239 I 0.702
PRUPE_ppa015966mg Prunus persica PRUPE_ppa015966mg I 0.702
MDP0000316609 Malus domestica MDP0000316609 I 0.702
MDP0000285581 Malus domestica MDP0000285581 I 0.702
BGIOSGA015023 Oryza indica BGIOSGA015023 I 0.700