MDP0000237091 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000237091 T258703_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN

NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.708 0.708
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH

DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.708 0.708
AGL15
M10927_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.708 0.708
AGL15
M10928_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000237091 MADS box 21 68

Links

Other MADS box family TFs
Other Malus domestica TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PRUPE_ppa024464mg Prunus persica PRUPE_ppa024464mg I 0.917
Pm017638 Prunus mume Pm017638 I 0.917
gene00615-v1.0-hybrid Fragaria vesca gene00615-v1.0-hybrid N 0.792
gene15090-v1.0-hybrid Fragaria vesca gene15090-v1.0-hybrid N 0.771
Cla010744 Citrullus lanatus Cla010744 N 0.771
Cucsa.342610 Cucumis sativus Cucsa.342610 N 0.750
cassava44772.m1 Manihot esculenta cassava44772.m1 N 0.729
MLOC_78558 Hordeum vulgare MLOC_78558 N 0.711
Ciclev10005698m.g Citrus clementina Ciclev10005698m.g I 0.708
Carubv10002596m.g Capsella rubella Carubv10002596m.g I 0.708
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.708
PGSC0003DMG400039595 Solanum tuberosum PGSC0003DMG400039595 N 0.708
orange1.1g039982m.g Citrus sinensis orange1.1g039982m.g I 0.708
Cagra.5588s0006 Capsella grandiflora Cagra.5588s0006 I 0.708
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.708
POPTR_0017s13400 Populus trichocarpa POPTR_0017s13400 I 0.708
Cla010989 Citrullus lanatus Cla010989 I 0.708
PRUPE_ppa010249mg Prunus persica PRUPE_ppa010249mg I 0.708
Pm015397 Prunus mume Pm015397 I 0.708
AGL15 Arabidopsis thaliana AT5G13790 D 0.708
Cucsa.174530 Cucumis sativus Cucsa.174530 I 0.708
Bra006214 Brassica rapa Bra006214 I 0.708
Bo3g009340 Brassica oleracea Bo3g009340 I 0.708