MDP0000315938 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000315938 T258744_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q8VWZ4_MALDO
M11026_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS13_01
1.000 1.000
AP3
M08146_2.00
Arabidopsis thaliana
WDCCMAAARWRGHAA

TTDCYWYTTTKGGHW
ChIP-seq
Mathelier et al.(2014)
MA0556.1
0.812 0.812
Q40513_TOBAC
M11001_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DEF_01
0.812 0.812
AP3
M10919_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADSB_Q2
0.812 0.812
MADS2_PETHY
M10998_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS2_01
0.771 0.771
Q9AVU7_MALDO
M11027_2.00
Malus domestica Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PI_01
0.750 0.750
MADS16
M10971_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MADS16_01
0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000315938 MADS box 10 57

Links

Other MADS box family TFs
Other Malus domestica TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 1.000
MDP0000184294 Malus domestica MDP0000184294 I 1.000
MDP0000133037 Malus domestica MDP0000133037 I 0.979
MDP0000224779 Malus domestica MDP0000224779 I 0.979
Pm026712 Prunus mume Pm026712 I 0.957
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.938
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.917
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.917
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.896
POPTR_0007s13660 Populus trichocarpa POPTR_0007s13660 I 0.896
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.896
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.896
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.896
SapurV1A.0569s0080 Salix purpurea SapurV1A.0569s0080 I 0.896
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.875
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.875
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.875
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.875
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.875
SapurV1A.0396s0210 Salix purpurea SapurV1A.0396s0210 I 0.875
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.875
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.875
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.875
Ca_01994 Cicer arietinum Ca_01994 I 0.875
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.854
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.854
AP3 Vitis vinifera VIT_18s0001g13460 I 0.854
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.854
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.833
29782.m000119 Ricinus communis 29782.m000119 I 0.833
Eucgr.F01615 Eucalyptus grandis Eucgr.F01615 I 0.833
TCM_000266 Theobroma cacao TCM_000266 I 0.833
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.812
mgf015533m Mimulus guttatus mgf015533m I 0.812
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.812
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.812
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.812
Q40513_TOBAC Nicotiana tabacum Q40513_TOBAC D 0.812
Ca_04909 Cicer arietinum Ca_04909 I 0.812
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.812
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.812
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.812
Cla021117 Citrullus lanatus Cla021117 I 0.812
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.812
AP3 Arabidopsis thaliana AT3G54340 D 0.812
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.812
Ciclev10002410m.g Citrus clementina Ciclev10002410m.g I 0.792
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.792
orange1.1g040046m.g Citrus sinensis orange1.1g040046m.g I 0.792
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.792
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.792
Eucgr.I02376 Eucalyptus grandis Eucgr.I02376 I 0.792
Gorai.009G271100 Gossypium raimondii Gorai.009G271100 I 0.792
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.792
Pm006266 Prunus mume Pm006266 I 0.792
PGSC0003DMG400003709 Solanum tuberosum PGSC0003DMG400003709 I 0.792
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.792
Solyc04g081000.2 Solanum lycopersicum Solyc04g081000.2 I 0.792
Bra007067 Brassica rapa Bra007067 I 0.792
Bra014822 Brassica rapa Bra014822 I 0.792
Bo8g083600 Brassica oleracea Bo8g083600 I 0.792
Bo4g120010 Brassica oleracea Bo4g120010 I 0.792
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.771
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.771
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.771
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.771
TCM_034148 Theobroma cacao TCM_034148 I 0.771
AP3 Populus trichocarpa POPTR_0002s02990 I 0.771
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.771
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.771
mgf000046m Mimulus guttatus mgf000046m I 0.766
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.760
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.750
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.750
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.750
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.750
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.750
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.750
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.729
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.729
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.729
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.729
OBART06G27230 Oryza barthii OBART06G27230 I 0.729
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.729
OB06G35020 Oryza brachyantha OB06G35020 I 0.729
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.729
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.729
SapurV1A.0025s0830 Salix purpurea SapurV1A.0025s0830 I 0.729
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.729
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.729
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.729
orange1.1g024093m.g Citrus sinensis orange1.1g024093m.g I 0.729
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.729
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.729
MADS16 Oryza sativa OS06G0712700 D 0.729
Aquca_007_00336 Aquilegia coerulea Aquca_007_00336 I 0.729
Si007221m.g Setaria italica Si007221m.g I 0.729
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.729
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.729
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.729
TCM_035212 Theobroma cacao TCM_035212 I 0.729
29648.m001978 Ricinus communis 29648.m001978 I 0.729
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.729
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.729
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.729
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.729
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.729
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.729
Ciclev10009338m.g Citrus clementina Ciclev10009338m.g I 0.729
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.729
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.729
Pm004718 Prunus mume Pm004718 I 0.708
Ca_13111 Cicer arietinum Ca_13111 I 0.708
Cla023547 Citrullus lanatus Cla023547 I 0.708
GRMZM2G137289 Zea mays GRMZM2G137289 I 0.708
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.708
PI Vitis vinifera VIT_18s0001g01760 I 0.708
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.708
Aquca_032_00047 Aquilegia coerulea Aquca_032_00047 I 0.708
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.708
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.708